miRNA display CGI


Results 1 - 20 of 698 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6665 5' -53.9 NC_001847.1 + 231 0.7 0.815737
Target:  5'- ----cGAGCcCG-GGCcUCGCGCCCCg -3'
miRNA:   3'- guauaUUCGcGCgCUGuAGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 297 0.7 0.797721
Target:  5'- ------cGCGgGCGcCGUcccCGCGCCCCg -3'
miRNA:   3'- guauauuCGCgCGCuGUA---GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 387 0.66 0.953514
Target:  5'- ------cGCGCGCcgGAC--CGCGCUCCg -3'
miRNA:   3'- guauauuCGCGCG--CUGuaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 598 0.67 0.924858
Target:  5'- -uUGUGuccUGCcCGACGaCGCGCCCCg -3'
miRNA:   3'- guAUAUuc-GCGcGCUGUaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 621 0.75 0.524323
Target:  5'- -----cGGCGCGCGGCc-CGCGCCUCc -3'
miRNA:   3'- guauauUCGCGCGCUGuaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 999 0.71 0.769555
Target:  5'- -----cGGCG-GCGGCA-CGCGCUCCa -3'
miRNA:   3'- guauauUCGCgCGCUGUaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 1094 0.66 0.953514
Target:  5'- ----cGGGCGcCGCGGCcgCgggcgGCGCCgCCg -3'
miRNA:   3'- guauaUUCGC-GCGCUGuaG-----CGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 1151 0.67 0.924858
Target:  5'- -----cGGCGCGCGGCuccggcagCGCGgCCg -3'
miRNA:   3'- guauauUCGCGCGCUGua------GCGCgGGg -5'
6665 5' -53.9 NC_001847.1 + 1216 0.66 0.935394
Target:  5'- gGUGUucuuuuAGCGCGCGG----GCGCCCg -3'
miRNA:   3'- gUAUAu-----UCGCGCGCUguagCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 1379 0.66 0.935394
Target:  5'- ----cGAGCGC-CGGCAgcaCGCGCUgCCg -3'
miRNA:   3'- guauaUUCGCGcGCUGUa--GCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 1414 0.75 0.504425
Target:  5'- ----cAGGCaCGCGGCccCGCGCCCCg -3'
miRNA:   3'- guauaUUCGcGCGCUGuaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 1535 0.67 0.907192
Target:  5'- ------cGCGCGCGAag--GCGCCCg -3'
miRNA:   3'- guauauuCGCGCGCUguagCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 1580 0.71 0.759899
Target:  5'- -----cGGCGCGCGcCAgCGCGCCgCu -3'
miRNA:   3'- guauauUCGCGCGCuGUaGCGCGGgG- -5'
6665 5' -53.9 NC_001847.1 + 1607 0.71 0.740244
Target:  5'- -----cAGCGCGCGGCGcacUGCGCCgCg -3'
miRNA:   3'- guauauUCGCGCGCUGUa--GCGCGGgG- -5'
6665 5' -53.9 NC_001847.1 + 1820 0.7 0.797721
Target:  5'- ----cGAGCGCGCucACGUCcgGCGCgCCCg -3'
miRNA:   3'- guauaUUCGCGCGc-UGUAG--CGCG-GGG- -5'
6665 5' -53.9 NC_001847.1 + 2072 0.68 0.894191
Target:  5'- -----cAGCG-GUGGCGgcgaGCGCCCCg -3'
miRNA:   3'- guauauUCGCgCGCUGUag--CGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 2469 0.75 0.534384
Target:  5'- ----cGAGCGgGCGGCG--GCGCCCCc -3'
miRNA:   3'- guauaUUCGCgCGCUGUagCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 2764 0.67 0.919216
Target:  5'- -----cGGCGC-CGGCGcCgGCGCCCCc -3'
miRNA:   3'- guauauUCGCGcGCUGUaG-CGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 2852 0.68 0.900812
Target:  5'- -----cAGCGCGCG-CGccaGCGCCCa -3'
miRNA:   3'- guauauUCGCGCGCuGUag-CGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 2985 0.67 0.924858
Target:  5'- uUAUGUucGCggccccacccuGCGCGGCAgcaGCGCCgCCc -3'
miRNA:   3'- -GUAUAuuCG-----------CGCGCUGUag-CGCGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.