miRNA display CGI


Results 1 - 20 of 698 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6665 5' -53.9 NC_001847.1 + 111466 1.13 0.002214
Target:  5'- aCAUAUAAGCGCGCGACAUCGCGCCCCa -3'
miRNA:   3'- -GUAUAUUCGCGCGCUGUAGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 8653 1.13 0.002214
Target:  5'- aCAUAUAAGCGCGCGACAUCGCGCCCCa -3'
miRNA:   3'- -GUAUAUUCGCGCGCUGUAGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 97322 0.86 0.137147
Target:  5'- ----cAGGCGCGuCGGCGUCGCGCCCg -3'
miRNA:   3'- guauaUUCGCGC-GCUGUAGCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 83200 0.85 0.156325
Target:  5'- ----gGGGuCGCGCGGcCGUCGCGCCCCg -3'
miRNA:   3'- guauaUUC-GCGCGCU-GUAGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 52513 0.84 0.168968
Target:  5'- ----gGAGCGCGCGGCcgCGCGgCCCg -3'
miRNA:   3'- guauaUUCGCGCGCUGuaGCGCgGGG- -5'
6665 5' -53.9 NC_001847.1 + 43476 0.82 0.234802
Target:  5'- ----cGAGCGCGCGA--UCGCGUCCCg -3'
miRNA:   3'- guauaUUCGCGCGCUguAGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 53318 0.81 0.259015
Target:  5'- -----cGGCGgGCGACAggacggCGCGCCCCg -3'
miRNA:   3'- guauauUCGCgCGCUGUa-----GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 38031 0.81 0.265379
Target:  5'- -cUGUGGGCGCGCGcCGcCGCGCCgCCg -3'
miRNA:   3'- guAUAUUCGCGCGCuGUaGCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 90447 0.81 0.271868
Target:  5'- --aAUAAGCGCGCGGuCcgCGCGgCCCa -3'
miRNA:   3'- guaUAUUCGCGCGCU-GuaGCGCgGGG- -5'
6665 5' -53.9 NC_001847.1 + 51684 0.8 0.306232
Target:  5'- --cGUAcGCGCGCGcCGUCGCGCgCCg -3'
miRNA:   3'- guaUAUuCGCGCGCuGUAGCGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 85192 0.8 0.306232
Target:  5'- ---cUAGGUGCGCGGCAcCGCGCgCCa -3'
miRNA:   3'- guauAUUCGCGCGCUGUaGCGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 44805 0.8 0.306232
Target:  5'- ----aAAGCgccgaGCGCGGCAcCGCGCCCCa -3'
miRNA:   3'- guauaUUCG-----CGCGCUGUaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 31226 0.8 0.306232
Target:  5'- --cGUGGGCGCGCGaaaGCGgggCGCGCCCg -3'
miRNA:   3'- guaUAUUCGCGCGC---UGUa--GCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 43578 0.79 0.313492
Target:  5'- ------cGCGgGCGACG-CGCGCCCCa -3'
miRNA:   3'- guauauuCGCgCGCUGUaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 51936 0.79 0.313492
Target:  5'- uCGUGgccgGGGCGCGaCGGCcgCGCGaCCCCg -3'
miRNA:   3'- -GUAUa---UUCGCGC-GCUGuaGCGC-GGGG- -5'
6665 5' -53.9 NC_001847.1 + 92711 0.79 0.320881
Target:  5'- ----cGAGCGCGCGcCAUCGCcGCCaCCg -3'
miRNA:   3'- guauaUUCGCGCGCuGUAGCG-CGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 82633 0.79 0.3284
Target:  5'- ----cGGGcCGCGCGGCcgCGCGCUCCg -3'
miRNA:   3'- guauaUUC-GCGCGCUGuaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 79668 0.78 0.367928
Target:  5'- cCAUAgcaGGGCagcggcuaGCGCGGCG-CGCGCCCCg -3'
miRNA:   3'- -GUAUa--UUCG--------CGCGCUGUaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 110813 0.78 0.376216
Target:  5'- ------cGCGCGCGGCGUgGCGCgCCa -3'
miRNA:   3'- guauauuCGCGCGCUGUAgCGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 122018 0.78 0.384629
Target:  5'- ----cAGGCgGCGCGGCGccgcccgCGCGCCCCg -3'
miRNA:   3'- guauaUUCG-CGCGCUGUa------GCGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.