miRNA display CGI


Results 1 - 20 of 698 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6665 5' -53.9 NC_001847.1 + 14449 0.74 0.554702
Target:  5'- ----cGAGCGCGCGGCcgCGCuGCUCg -3'
miRNA:   3'- guauaUUCGCGCGCUGuaGCG-CGGGg -5'
6665 5' -53.9 NC_001847.1 + 75801 0.76 0.456219
Target:  5'- -----cGGCGCGCGACcUCGCcGCCgCCa -3'
miRNA:   3'- guauauUCGCGCGCUGuAGCG-CGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 134772 0.76 0.484862
Target:  5'- -----cGGCGCGCGGCGcgcggggCGgGCCCCg -3'
miRNA:   3'- guauauUCGCGCGCUGUa------GCgCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 1414 0.75 0.504425
Target:  5'- ----cAGGCaCGCGGCccCGCGCCCCg -3'
miRNA:   3'- guauaUUCGcGCGCUGuaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 59410 0.75 0.514335
Target:  5'- ----gAGGCGCgGCGGuCAUCgcuGCGCCCCg -3'
miRNA:   3'- guauaUUCGCG-CGCU-GUAG---CGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 77986 0.75 0.524323
Target:  5'- -----uGGCGgGCGGCGagCGCGCCCUg -3'
miRNA:   3'- guauauUCGCgCGCUGUa-GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 115714 0.75 0.524323
Target:  5'- ----cGGGCGCGCGGCcuuUgGCGCuCCCg -3'
miRNA:   3'- guauaUUCGCGCGCUGu--AgCGCG-GGG- -5'
6665 5' -53.9 NC_001847.1 + 103434 0.75 0.524323
Target:  5'- -----cGGCGCGCGGCc-CGCGCCUCc -3'
miRNA:   3'- guauauUCGCGCGCUGuaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 2469 0.75 0.534384
Target:  5'- ----cGAGCGgGCGGCG--GCGCCCCc -3'
miRNA:   3'- guauaUUCGCgCGCUGUagCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 88542 0.77 0.437639
Target:  5'- aCGUGUGuGCGCGUGGCGUgacCGCGCUCg -3'
miRNA:   3'- -GUAUAUuCGCGCGCUGUA---GCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 126478 0.77 0.4195
Target:  5'- uGUGUGGGCuugggGCGCGAUGUCGCGCgCUu -3'
miRNA:   3'- gUAUAUUCG-----CGCGCUGUAGCGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 42640 0.77 0.410603
Target:  5'- -----cAGCGC-CGACGUCGUGCCCUu -3'
miRNA:   3'- guauauUCGCGcGCUGUAGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 52513 0.84 0.168968
Target:  5'- ----gGAGCGCGCGGCcgCGCGgCCCg -3'
miRNA:   3'- guauaUUCGCGCGCUGuaGCGCgGGG- -5'
6665 5' -53.9 NC_001847.1 + 43476 0.82 0.234802
Target:  5'- ----cGAGCGCGCGA--UCGCGUCCCg -3'
miRNA:   3'- guauaUUCGCGCGCUguAGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 38031 0.81 0.265379
Target:  5'- -cUGUGGGCGCGCGcCGcCGCGCCgCCg -3'
miRNA:   3'- guAUAUUCGCGCGCuGUaGCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 31226 0.8 0.306232
Target:  5'- --cGUGGGCGCGCGaaaGCGgggCGCGCCCg -3'
miRNA:   3'- guaUAUUCGCGCGC---UGUa--GCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 43578 0.79 0.313492
Target:  5'- ------cGCGgGCGACG-CGCGCCCCa -3'
miRNA:   3'- guauauuCGCgCGCUGUaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 51936 0.79 0.313492
Target:  5'- uCGUGgccgGGGCGCGaCGGCcgCGCGaCCCCg -3'
miRNA:   3'- -GUAUa---UUCGCGC-GCUGuaGCGC-GGGG- -5'
6665 5' -53.9 NC_001847.1 + 45553 0.77 0.401824
Target:  5'- -----cAGCGCguucaccgcgGCGGCGUCGCGCUCCa -3'
miRNA:   3'- guauauUCGCG----------CGCUGUAGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 41163 0.77 0.407956
Target:  5'- --aGUGAGCGCGCGGCGcgggCGCGCguguuaagagggcgCCCa -3'
miRNA:   3'- guaUAUUCGCGCGCUGUa---GCGCG--------------GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.