miRNA display CGI


Results 1 - 20 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6666 5' -53.1 NC_001847.1 + 52797 0.66 0.96366
Target:  5'- -gCGGCGAcauGGGCGGGGcuaUAGGuCGCucGUCg -3'
miRNA:   3'- ggGCCGUU---UCCGUUCC---AUUC-GCG--UAG- -5'
6666 5' -53.1 NC_001847.1 + 10855 0.66 0.96366
Target:  5'- gCgUGGCcGAGGCGcGGcGGGCGCGg- -3'
miRNA:   3'- -GgGCCGuUUCCGUuCCaUUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 39755 0.66 0.96366
Target:  5'- cCCCGGCGccGGCcucaGAGccGgcGGCGCGg- -3'
miRNA:   3'- -GGGCCGUuuCCG----UUC--CauUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 55375 0.66 0.96366
Target:  5'- gCCGGagacgGucGGCGAGGacAGCGuCGUCa -3'
miRNA:   3'- gGGCCg----UuuCCGUUCCauUCGC-GUAG- -5'
6666 5' -53.1 NC_001847.1 + 47898 0.66 0.96366
Target:  5'- -gCGGCAGAucccGCGGcGGUGAGCGCu-- -3'
miRNA:   3'- ggGCCGUUUc---CGUU-CCAUUCGCGuag -5'
6666 5' -53.1 NC_001847.1 + 37197 0.66 0.96366
Target:  5'- gCCCGGUGcGAGGCGcccGGUGccgcuuggcggcGGCGCGg- -3'
miRNA:   3'- -GGGCCGU-UUCCGUu--CCAU------------UCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 51253 0.66 0.96366
Target:  5'- gCCaCGGCAucuucugcGGGCAGccGGUGgacgGGCGCAa- -3'
miRNA:   3'- -GG-GCCGUu-------UCCGUU--CCAU----UCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 91261 0.66 0.96366
Target:  5'- -aCGGCGAAGGCAAagccccGGaAGGCcgGCAUg -3'
miRNA:   3'- ggGCCGUUUCCGUU------CCaUUCG--CGUAg -5'
6666 5' -53.1 NC_001847.1 + 119379 0.66 0.963312
Target:  5'- aCUCGGCGc-GGCucgcGGGUAcaccuuuGGCGCGUg -3'
miRNA:   3'- -GGGCCGUuuCCGu---UCCAU-------UCGCGUAg -5'
6666 5' -53.1 NC_001847.1 + 36258 0.66 0.960074
Target:  5'- uCCCGGCcuGGGCcgcccAGGCGCAc- -3'
miRNA:   3'- -GGGCCGuuUCCGuuccaUUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 34675 0.66 0.960074
Target:  5'- gCCGcGCAgcGGCAGGagGAGCGCuggCg -3'
miRNA:   3'- gGGC-CGUuuCCGUUCcaUUCGCGua-G- -5'
6666 5' -53.1 NC_001847.1 + 57665 0.66 0.960074
Target:  5'- gUCgGGCAGgcgguGGGCAcGGUGgugcugGGCGCcgCg -3'
miRNA:   3'- -GGgCCGUU-----UCCGUuCCAU------UCGCGuaG- -5'
6666 5' -53.1 NC_001847.1 + 36952 0.66 0.960074
Target:  5'- gCCGaGCGGGGGCugcGGccAGCGCGg- -3'
miRNA:   3'- gGGC-CGUUUCCGuu-CCauUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 123622 0.66 0.960074
Target:  5'- -gCGGCAAAcucGGCcGGGgcGGCGCc-- -3'
miRNA:   3'- ggGCCGUUU---CCGuUCCauUCGCGuag -5'
6666 5' -53.1 NC_001847.1 + 109265 0.66 0.960074
Target:  5'- gUCGGCAGGGGCGggcugcaagcgAGGggGGCGag-Ca -3'
miRNA:   3'- gGGCCGUUUCCGU-----------UCCauUCGCguaG- -5'
6666 5' -53.1 NC_001847.1 + 68460 0.66 0.960074
Target:  5'- gCCCGcuGUGGAGGCGAGGguugAAGacggGCAUg -3'
miRNA:   3'- -GGGC--CGUUUCCGUUCCa---UUCg---CGUAg -5'
6666 5' -53.1 NC_001847.1 + 4880 0.66 0.956251
Target:  5'- gCgGGCAgcGGCAGGGcccccGCGCcgCu -3'
miRNA:   3'- gGgCCGUuuCCGUUCCauu--CGCGuaG- -5'
6666 5' -53.1 NC_001847.1 + 102566 0.66 0.956251
Target:  5'- uCCCaGCucuGGGGCAGcggcGGgcGGCGcCAUCc -3'
miRNA:   3'- -GGGcCGu--UUCCGUU----CCauUCGC-GUAG- -5'
6666 5' -53.1 NC_001847.1 + 104228 0.66 0.956251
Target:  5'- -gCGGCAcGGGCAccgcGGUGcgcgggcccaGGCGCGUg -3'
miRNA:   3'- ggGCCGUuUCCGUu---CCAU----------UCGCGUAg -5'
6666 5' -53.1 NC_001847.1 + 1415 0.66 0.956251
Target:  5'- -gCGGCAcGGGCAccgcGGUGcgcgggcccaGGCGCGUg -3'
miRNA:   3'- ggGCCGUuUCCGUu---CCAU----------UCGCGUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.