Results 1 - 20 of 202 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6667 | 3' | -63.8 | NC_001847.1 | + | 51965 | 0.65 | 0.567297 |
Target: 5'- -cCCCCCGCCgUCCGCCagcccguCGGGCgUUGGGa -3' miRNA: 3'- guGGGGGUGG-GGGUGG-------GCUCG-AGCUC- -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 60133 | 0.66 | 0.558657 |
Target: 5'- uGCCCgCuggcCCCCCGCCCGccGGCggacUGAGc -3' miRNA: 3'- gUGGGgGu---GGGGGUGGGC--UCGa---GCUC- -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 127024 | 0.66 | 0.558657 |
Target: 5'- cCGCCCCUgggGCCCCgCGCCUGcGCUgGc- -3' miRNA: 3'- -GUGGGGG---UGGGG-GUGGGCuCGAgCuc -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 92182 | 0.66 | 0.558657 |
Target: 5'- gGCCggcggCCCGCCCCC-CCCGcGCgCGGc -3' miRNA: 3'- gUGG-----GGGUGGGGGuGGGCuCGaGCUc -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 999 | 0.66 | 0.558657 |
Target: 5'- gCACCUUCuGCCCCCACCagcuGCUagcaGAGg -3' miRNA: 3'- -GUGGGGG-UGGGGGUGGgcu-CGAg---CUC- -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 107239 | 0.66 | 0.558657 |
Target: 5'- gCGCCCuCCGCCCCCucgGCCUcGGCgcacuccgCGAc -3' miRNA: 3'- -GUGGG-GGUGGGGG---UGGGcUCGa-------GCUc -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 34222 | 0.66 | 0.558657 |
Target: 5'- gCACCgCCGCggcuauUUCCACCCGAGCccCGAc -3' miRNA: 3'- -GUGGgGGUG------GGGGUGGGCUCGa-GCUc -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 4426 | 0.66 | 0.558657 |
Target: 5'- gCGCCCuCCGCCCCCucgGCCUcGGCgcacuccgCGAc -3' miRNA: 3'- -GUGGG-GGUGGGGG---UGGGcUCGa-------GCUc -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 908 | 0.66 | 0.549101 |
Target: 5'- gGCCgCCgGCCgCCGCCCGccGGCgcCGGGa -3' miRNA: 3'- gUGG-GGgUGGgGGUGGGC--UCGa-GCUC- -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 30971 | 0.66 | 0.549101 |
Target: 5'- uGCCCCCuaguaCCCCugUgGAGCagCGAa -3' miRNA: 3'- gUGGGGGug---GGGGugGgCUCGa-GCUc -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 125624 | 0.66 | 0.549101 |
Target: 5'- aCGCUagCgCGCCgCCCGCUCG-GCUCGGGu -3' miRNA: 3'- -GUGG--GgGUGG-GGGUGGGCuCGAGCUC- -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 9589 | 0.66 | 0.549101 |
Target: 5'- -uCCCUCGCCCCCAucccCCCGAuccCUCGc- -3' miRNA: 3'- guGGGGGUGGGGGU----GGGCUc--GAGCuc -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 112402 | 0.66 | 0.549101 |
Target: 5'- -uCCCUCGCCCCCAucccCCCGAuccCUCGc- -3' miRNA: 3'- guGGGGGUGGGGGU----GGGCUc--GAGCuc -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 55884 | 0.66 | 0.549101 |
Target: 5'- uCGCCCgCGgCCCgACgCCGgcuagcAGCUCGGGg -3' miRNA: 3'- -GUGGGgGUgGGGgUG-GGC------UCGAGCUC- -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 38817 | 0.66 | 0.549101 |
Target: 5'- aGCCCgCCGCCCaCCGacaCCGAGCg---- -3' miRNA: 3'- gUGGG-GGUGGG-GGUg--GGCUCGagcuc -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 30215 | 0.66 | 0.549101 |
Target: 5'- gCGCCgaagCCGCgCgCGCCCGGGC-CGAGg -3' miRNA: 3'- -GUGGg---GGUGgGgGUGGGCUCGaGCUC- -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 103721 | 0.66 | 0.549101 |
Target: 5'- gGCCgCCgGCCgCCGCCCGccGGCgcCGGGa -3' miRNA: 3'- gUGG-GGgUGGgGGUGGGC--UCGa-GCUC- -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 66687 | 0.66 | 0.549101 |
Target: 5'- aACCCUCGCCUCCACagCGGGCg---- -3' miRNA: 3'- gUGGGGGUGGGGGUGg-GCUCGagcuc -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 47369 | 0.66 | 0.539597 |
Target: 5'- uGCCCCC-CCggcggCCCGa-CGAGCUCGAc -3' miRNA: 3'- gUGGGGGuGG-----GGGUggGCUCGAGCUc -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 28986 | 0.66 | 0.539597 |
Target: 5'- aCGCCCCCAUggCCUACCCGgaGGC-CGGc -3' miRNA: 3'- -GUGGGGGUGg-GGGUGGGC--UCGaGCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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