miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6668 3' -54.8 NC_001847.1 + 75144 0.66 0.915613
Target:  5'- cCgGGgCCGGCgGUGCUCUcgguuagguuuUGCAGuuGCu -3'
miRNA:   3'- -GgUCgGGUCGgUACGAGA-----------ACGUCu-UG- -5'
6668 3' -54.8 NC_001847.1 + 88649 0.66 0.915613
Target:  5'- gCCuGCUCAG-CGUGCUgUUGCGcGACu -3'
miRNA:   3'- -GGuCGGGUCgGUACGAgAACGUcUUG- -5'
6668 3' -54.8 NC_001847.1 + 65448 0.66 0.915613
Target:  5'- aCCAGCCCGcCCGUGUag--GCGGGcgcGCg -3'
miRNA:   3'- -GGUCGGGUcGGUACGagaaCGUCU---UG- -5'
6668 3' -54.8 NC_001847.1 + 35550 0.66 0.915013
Target:  5'- gCAGCCCcgcGCCAaGCUUggcgUGCgcgcuuuGGAGCg -3'
miRNA:   3'- gGUCGGGu--CGGUaCGAGa---ACG-------UCUUG- -5'
6668 3' -54.8 NC_001847.1 + 28532 0.66 0.9095
Target:  5'- gCCGccGCCCGGCCGcgugcGCUUcgGCGGcGCg -3'
miRNA:   3'- -GGU--CGGGUCGGUa----CGAGaaCGUCuUG- -5'
6668 3' -54.8 NC_001847.1 + 99756 0.66 0.9095
Target:  5'- gCCGGCCCGgcagugagccGCCGcgGCUUUggGCGGGGg -3'
miRNA:   3'- -GGUCGGGU----------CGGUa-CGAGAa-CGUCUUg -5'
6668 3' -54.8 NC_001847.1 + 100830 0.66 0.9095
Target:  5'- cUCGGCCCGGgCG-GCUCcgGcCAGGGCc -3'
miRNA:   3'- -GGUCGGGUCgGUaCGAGaaC-GUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 53110 0.66 0.9095
Target:  5'- gCGGCCC-GCCAgcgGCUgCUUGCcauccucGGGCa -3'
miRNA:   3'- gGUCGGGuCGGUa--CGA-GAACGu------CUUG- -5'
6668 3' -54.8 NC_001847.1 + 131345 0.66 0.9095
Target:  5'- gCCGccGCCCGGCCGcgugcGCUUcgGCGGcGCg -3'
miRNA:   3'- -GGU--CGGGUCGGUa----CGAGaaCGUCuUG- -5'
6668 3' -54.8 NC_001847.1 + 99378 0.66 0.9095
Target:  5'- cCCAGCCUAGCaCAcacUGCgugugUGUAGGGg -3'
miRNA:   3'- -GGUCGGGUCG-GU---ACGaga--ACGUCUUg -5'
6668 3' -54.8 NC_001847.1 + 42020 0.66 0.9095
Target:  5'- gCAGCCCGGCCA-GCUUcgccCGGuACg -3'
miRNA:   3'- gGUCGGGUCGGUaCGAGaac-GUCuUG- -5'
6668 3' -54.8 NC_001847.1 + 115420 0.66 0.9095
Target:  5'- gCCGcGUCCGGCCAacCUCgucGCGGGGCc -3'
miRNA:   3'- -GGU-CGGGUCGGUacGAGaa-CGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 115964 0.66 0.9095
Target:  5'- cCCcGCCCccGCCGUGCUgc-GCGGggUa -3'
miRNA:   3'- -GGuCGGGu-CGGUACGAgaaCGUCuuG- -5'
6668 3' -54.8 NC_001847.1 + 35412 0.66 0.903136
Target:  5'- gCCGGCUCGGCCuacgagGCgcagaUGCuGAGCa -3'
miRNA:   3'- -GGUCGGGUCGGua----CGaga--ACGuCUUG- -5'
6668 3' -54.8 NC_001847.1 + 109737 0.66 0.903136
Target:  5'- ---aCCUGGCCAaGCUCgaggGCGGGGCg -3'
miRNA:   3'- ggucGGGUCGGUaCGAGaa--CGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 104324 0.66 0.903136
Target:  5'- aCGGCCCcgccGCCGUGUUUgccgcggcgGCAGAcGCg -3'
miRNA:   3'- gGUCGGGu---CGGUACGAGaa-------CGUCU-UG- -5'
6668 3' -54.8 NC_001847.1 + 59201 0.66 0.903136
Target:  5'- gUAGCCCGagccguccgcGCCGUGCgCUUGCAc--- -3'
miRNA:   3'- gGUCGGGU----------CGGUACGaGAACGUcuug -5'
6668 3' -54.8 NC_001847.1 + 77498 0.66 0.903136
Target:  5'- gCCGGCCCgagucgguGGCCGgggaGCUCgcgcgUGCcugcGAGCg -3'
miRNA:   3'- -GGUCGGG--------UCGGUa---CGAGa----ACGu---CUUG- -5'
6668 3' -54.8 NC_001847.1 + 11641 0.66 0.903136
Target:  5'- gCAGCCCuGGCCccgGCcccgCUUGCGGcGGCc -3'
miRNA:   3'- gGUCGGG-UCGGua-CGa---GAACGUC-UUG- -5'
6668 3' -54.8 NC_001847.1 + 36859 0.66 0.896524
Target:  5'- cUCGGCggCGGCCGaGCUCUacGCGGGGCu -3'
miRNA:   3'- -GGUCGg-GUCGGUaCGAGAa-CGUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.