Results 1 - 20 of 170 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6669 | 5' | -53.1 | NC_001847.1 | + | 46221 | 0.66 | 0.958899 |
Target: 5'- -cGGGCCGGCCGcGggGAaaucucGCACCAg -3' miRNA: 3'- caUCUGGUCGGC-CuuUUcc----UGUGGUg -5' |
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6669 | 5' | -53.1 | NC_001847.1 | + | 14537 | 0.66 | 0.958899 |
Target: 5'- -gAGuACCGGCUGGAGuauGAccGCGCCGCa -3' miRNA: 3'- caUC-UGGUCGGCCUU---UUccUGUGGUG- -5' |
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6669 | 5' | -53.1 | NC_001847.1 | + | 19611 | 0.66 | 0.954995 |
Target: 5'- -cGGGCCcgAGCuCGGGcccGGGGCGCCGg -3' miRNA: 3'- caUCUGG--UCG-GCCUuu-UCCUGUGGUg -5' |
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6669 | 5' | -53.1 | NC_001847.1 | + | 122882 | 0.66 | 0.958899 |
Target: 5'- uUGGACUcGCgGGAcugguGGGCAUCGCa -3' miRNA: 3'- cAUCUGGuCGgCCUuuu--CCUGUGGUG- -5' |
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6669 | 5' | -53.1 | NC_001847.1 | + | 115941 | 0.66 | 0.954995 |
Target: 5'- -gGGaACgAGCaGGGAGGGGuCGCCGCu -3' miRNA: 3'- caUC-UGgUCGgCCUUUUCCuGUGGUG- -5' |
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6669 | 5' | -53.1 | NC_001847.1 | + | 56887 | 0.66 | 0.950847 |
Target: 5'- -cGGGCCcGCCGGcGAcGGcGACGCCGg -3' miRNA: 3'- caUCUGGuCGGCC-UUuUC-CUGUGGUg -5' |
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6669 | 5' | -53.1 | NC_001847.1 | + | 129321 | 0.66 | 0.950847 |
Target: 5'- -cGGGCCuGCCGGGcgcGGGGCcgggggcguucgGCCAUg -3' miRNA: 3'- caUCUGGuCGGCCUuu-UCCUG------------UGGUG- -5' |
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6669 | 5' | -53.1 | NC_001847.1 | + | 134075 | 0.66 | 0.962563 |
Target: 5'- cGUGGACUGGgacgCGGAccAGGGC-CCGCg -3' miRNA: 3'- -CAUCUGGUCg---GCCUuuUCCUGuGGUG- -5' |
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6669 | 5' | -53.1 | NC_001847.1 | + | 133990 | 0.66 | 0.950847 |
Target: 5'- --cGGCCGcgcuGCCGGAGccgcgcgccGAGG-CGCCGCc -3' miRNA: 3'- cauCUGGU----CGGCCUU---------UUCCuGUGGUG- -5' |
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6669 | 5' | -53.1 | NC_001847.1 | + | 57273 | 0.66 | 0.946451 |
Target: 5'- -aGGGCCAGCuCGGc-GAGGACaacgaGCUGCu -3' miRNA: 3'- caUCUGGUCG-GCCuuUUCCUG-----UGGUG- -5' |
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6669 | 5' | -53.1 | NC_001847.1 | + | 31262 | 0.66 | 0.962563 |
Target: 5'- cGUGGACUGGgacgCGGAccAGGGC-CCGCg -3' miRNA: 3'- -CAUCUGGUCg---GCCUuuUCCUGuGGUG- -5' |
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6669 | 5' | -53.1 | NC_001847.1 | + | 88552 | 0.66 | 0.962563 |
Target: 5'- -gAGGCCGcGCCGGcgGGGcuGACGCCcgGCg -3' miRNA: 3'- caUCUGGU-CGGCCuuUUC--CUGUGG--UG- -5' |
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6669 | 5' | -53.1 | NC_001847.1 | + | 54533 | 0.66 | 0.954995 |
Target: 5'- -gGGGCCGuCCGGggGcgcagacggcgGGGGCGgCGCg -3' miRNA: 3'- caUCUGGUcGGCCuuU-----------UCCUGUgGUG- -5' |
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6669 | 5' | -53.1 | NC_001847.1 | + | 3260 | 0.66 | 0.962208 |
Target: 5'- -gAGACCAGuuccaauCCGGcaAAGAGGGCGacgugaacCCACg -3' miRNA: 3'- caUCUGGUC-------GGCC--UUUUCCUGU--------GGUG- -5' |
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6669 | 5' | -53.1 | NC_001847.1 | + | 79821 | 0.66 | 0.962563 |
Target: 5'- cGUGGcCCGcuGCCGGAAGuGGcgACCGCg -3' miRNA: 3'- -CAUCuGGU--CGGCCUUUuCCugUGGUG- -5' |
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6669 | 5' | -53.1 | NC_001847.1 | + | 2426 | 0.66 | 0.962563 |
Target: 5'- -gGGGCCccccgcggcGGCCGGc-AGGGcCGCCGCc -3' miRNA: 3'- caUCUGG---------UCGGCCuuUUCCuGUGGUG- -5' |
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6669 | 5' | -53.1 | NC_001847.1 | + | 105239 | 0.66 | 0.962563 |
Target: 5'- -gGGGCCccccgcggcGGCCGGc-AGGGcCGCCGCc -3' miRNA: 3'- caUCUGG---------UCGGCCuuUUCCuGUGGUG- -5' |
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6669 | 5' | -53.1 | NC_001847.1 | + | 6679 | 0.66 | 0.946451 |
Target: 5'- cUAGGCCgcggcGGCCGGcc--GGGCGCgCGCg -3' miRNA: 3'- cAUCUGG-----UCGGCCuuuuCCUGUG-GUG- -5' |
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6669 | 5' | -53.1 | NC_001847.1 | + | 130932 | 0.66 | 0.950847 |
Target: 5'- -aGGACCgaGGCCGGcGAcguugggcccGAGGACugCAg -3' miRNA: 3'- caUCUGG--UCGGCC-UU----------UUCCUGugGUg -5' |
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6669 | 5' | -53.1 | NC_001847.1 | + | 43021 | 0.66 | 0.950847 |
Target: 5'- -cGGGCC-GCC-GAAAAGGuGCGCUACu -3' miRNA: 3'- caUCUGGuCGGcCUUUUCC-UGUGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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