miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6669 5' -53.1 NC_001847.1 + 805 0.7 0.824788
Target:  5'- --cGACgAGgCGGggGAcGACGCCGCg -3'
miRNA:   3'- cauCUGgUCgGCCuuUUcCUGUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 1739 0.68 0.88133
Target:  5'- --cGGCCAGCCGcGcgcAGAGGuacucCACCGCg -3'
miRNA:   3'- cauCUGGUCGGC-Cu--UUUCCu----GUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 2426 0.66 0.962563
Target:  5'- -gGGGCCccccgcggcGGCCGGc-AGGGcCGCCGCc -3'
miRNA:   3'- caUCUGG---------UCGGCCuuUUCCuGUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 3260 0.66 0.962208
Target:  5'- -gAGACCAGuuccaauCCGGcaAAGAGGGCGacgugaacCCACg -3'
miRNA:   3'- caUCUGGUC-------GGCC--UUUUCCUGU--------GGUG- -5'
6669 5' -53.1 NC_001847.1 + 5071 0.67 0.914739
Target:  5'- --cGGCgGGCCGGGAgcGGGCGgCAg -3'
miRNA:   3'- cauCUGgUCGGCCUUuuCCUGUgGUg -5'
6669 5' -53.1 NC_001847.1 + 5331 0.68 0.902123
Target:  5'- -aAGGCCGGCCGGucGGAGcuGGCuagccgGCCGCg -3'
miRNA:   3'- caUCUGGUCGGCCu-UUUC--CUG------UGGUG- -5'
6669 5' -53.1 NC_001847.1 + 5680 0.68 0.88133
Target:  5'- gGUGGGCCGGCCGG----GGcCGCC-Ca -3'
miRNA:   3'- -CAUCUGGUCGGCCuuuuCCuGUGGuG- -5'
6669 5' -53.1 NC_001847.1 + 6534 0.71 0.759093
Target:  5'- cUGGGCCAcagccGCCGGugcGAGGGCGCgACc -3'
miRNA:   3'- cAUCUGGU-----CGGCCuu-UUCCUGUGgUG- -5'
6669 5' -53.1 NC_001847.1 + 6679 0.66 0.946451
Target:  5'- cUAGGCCgcggcGGCCGGcc--GGGCGCgCGCg -3'
miRNA:   3'- cAUCUGG-----UCGGCCuuuuCCUGUG-GUG- -5'
6669 5' -53.1 NC_001847.1 + 6760 0.71 0.76892
Target:  5'- -cGGugCGGCCGGugcGAGG-CGCCAg -3'
miRNA:   3'- caUCugGUCGGCCuu-UUCCuGUGGUg -5'
6669 5' -53.1 NC_001847.1 + 7089 0.68 0.908557
Target:  5'- -cGGGCCAGUuguaGGAGAccacguAGG-CGCCACg -3'
miRNA:   3'- caUCUGGUCGg---CCUUU------UCCuGUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 8046 0.78 0.399386
Target:  5'- gGUGGACCcaaAGCCGcgcggcccgcgcgcaGAGGGGGGCACCGCc -3'
miRNA:   3'- -CAUCUGG---UCGGC---------------CUUUUCCUGUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 12122 0.72 0.697953
Target:  5'- --cGGCCc-CCGGAcGAGGACACCAg -3'
miRNA:   3'- cauCUGGucGGCCUuUUCCUGUGGUg -5'
6669 5' -53.1 NC_001847.1 + 14219 0.75 0.549395
Target:  5'- -cAGGCCGGCCGGGGgcgugguGAGGGCAaacgccgagcCCGCu -3'
miRNA:   3'- caUCUGGUCGGCCUU-------UUCCUGU----------GGUG- -5'
6669 5' -53.1 NC_001847.1 + 14537 0.66 0.958899
Target:  5'- -gAGuACCGGCUGGAGuauGAccGCGCCGCa -3'
miRNA:   3'- caUC-UGGUCGGCCUU---UUccUGUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 15109 0.75 0.550431
Target:  5'- -gGGGgCGGUCGGggGAGGGCcuagGCCGCu -3'
miRNA:   3'- caUCUgGUCGGCCuuUUCCUG----UGGUG- -5'
6669 5' -53.1 NC_001847.1 + 15302 0.69 0.8584
Target:  5'- --uGACCGGCaCGGcGucGGGgGCCGCg -3'
miRNA:   3'- cauCUGGUCG-GCCuUuuCCUgUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 16965 0.72 0.687496
Target:  5'- -aGGGCCGGgCGGcagauuGAGGGGCACCGu -3'
miRNA:   3'- caUCUGGUCgGCCu-----UUUCCUGUGGUg -5'
6669 5' -53.1 NC_001847.1 + 17801 0.73 0.666444
Target:  5'- -cGGGCCccAGCgGGcGGGAGGGCGCCAUg -3'
miRNA:   3'- caUCUGG--UCGgCC-UUUUCCUGUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 18188 0.66 0.950847
Target:  5'- -cAGGgCAGCCGGA-----GCACCGCc -3'
miRNA:   3'- caUCUgGUCGGCCUuuuccUGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.