miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6669 5' -53.1 NC_001847.1 + 132371 0.71 0.759093
Target:  5'- -gAGGCC-GCCGGc-GGGGGCGCCGg -3'
miRNA:   3'- caUCUGGuCGGCCuuUUCCUGUGGUg -5'
6669 5' -53.1 NC_001847.1 + 34267 0.72 0.708351
Target:  5'- -cAGACCGGCgcgCGGcggcuGGGCGCCGCg -3'
miRNA:   3'- caUCUGGUCG---GCCuuuu-CCUGUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 23069 0.72 0.728928
Target:  5'- -cGGACC-GCCGGGucgccGAGGGCGCCc- -3'
miRNA:   3'- caUCUGGuCGGCCUu----UUCCUGUGGug -5'
6669 5' -53.1 NC_001847.1 + 131665 0.71 0.739086
Target:  5'- ---uGCC-GCCGGucGGGGACGCCAUg -3'
miRNA:   3'- caucUGGuCGGCCuuUUCCUGUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 87782 0.71 0.739086
Target:  5'- -cGGGCC-GCCGGG--GGGGCACgACu -3'
miRNA:   3'- caUCUGGuCGGCCUuuUCCUGUGgUG- -5'
6669 5' -53.1 NC_001847.1 + 32642 0.71 0.749145
Target:  5'- cGUGGACgAGCUGGAGGGcgagguGGACGgCGCc -3'
miRNA:   3'- -CAUCUGgUCGGCCUUUU------CCUGUgGUG- -5'
6669 5' -53.1 NC_001847.1 + 40350 0.71 0.749145
Target:  5'- -cGGGCCGGaaaCGGAAGAGGAgACagaaGCg -3'
miRNA:   3'- caUCUGGUCg--GCCUUUUCCUgUGg---UG- -5'
6669 5' -53.1 NC_001847.1 + 109347 0.71 0.759093
Target:  5'- cUGGGCCAcagccGCCGGugcGAGGGCGCgACc -3'
miRNA:   3'- cAUCUGGU-----CGGCCuu-UUCCUGUGgUG- -5'
6669 5' -53.1 NC_001847.1 + 117842 0.71 0.759093
Target:  5'- -cGGACCGGCCcGAccucugacAGAGGACgacGCCACc -3'
miRNA:   3'- caUCUGGUCGGcCU--------UUUCCUG---UGGUG- -5'
6669 5' -53.1 NC_001847.1 + 12122 0.72 0.697953
Target:  5'- --cGGCCc-CCGGAcGAGGACACCAg -3'
miRNA:   3'- cauCUGGucGGCCUuUUCCUGUGGUg -5'
6669 5' -53.1 NC_001847.1 + 124378 0.72 0.686448
Target:  5'- -aGGGCCggggagaGGgCGGGAGAGGGgGCCGCg -3'
miRNA:   3'- caUCUGG-------UCgGCCUUUUCCUgUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 99166 0.73 0.67699
Target:  5'- uGUGGcGCCAGCCGGc--GGGA-GCCACa -3'
miRNA:   3'- -CAUC-UGGUCGGCCuuuUCCUgUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 73739 0.8 0.299893
Target:  5'- -aGGGCCGGCUGGAGGAGG--GCCACu -3'
miRNA:   3'- caUCUGGUCGGCCUUUUCCugUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 8046 0.78 0.399386
Target:  5'- gGUGGACCcaaAGCCGcgcggcccgcgcgcaGAGGGGGGCACCGCc -3'
miRNA:   3'- -CAUCUGG---UCGGC---------------CUUUUCCUGUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 50283 0.77 0.441293
Target:  5'- cGUGGGCCgccuAGCCGGGcuaguGGGCGCCAUg -3'
miRNA:   3'- -CAUCUGG----UCGGCCUuuu--CCUGUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 70205 0.76 0.473816
Target:  5'- -cGGACCAGCUgcugcgcgugcugcuGGAGAAGG-CGCCGCc -3'
miRNA:   3'- caUCUGGUCGG---------------CCUUUUCCuGUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 59923 0.75 0.550431
Target:  5'- --cGGCgagAGCCGGcGGAAGGGCGCCACg -3'
miRNA:   3'- cauCUGg--UCGGCC-UUUUCCUGUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 98741 0.75 0.550431
Target:  5'- -gGGGCCggGGCCGGGGccGGGGCAUCGCu -3'
miRNA:   3'- caUCUGG--UCGGCCUUu-UCCUGUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 59485 0.74 0.592301
Target:  5'- cGUAGuccCCAGCCGGcAGGGGGuGCGCCGa -3'
miRNA:   3'- -CAUCu--GGUCGGCC-UUUUCC-UGUGGUg -5'
6669 5' -53.1 NC_001847.1 + 75021 0.73 0.666444
Target:  5'- -gGGGCCAGCgGGcAGAAGG-CGCCGu -3'
miRNA:   3'- caUCUGGUCGgCC-UUUUCCuGUGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.