miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6669 5' -53.1 NC_001847.1 + 114981 1.09 0.00419
Target:  5'- cGUAGACCAGCCGGAAAAGGACACCACc -3'
miRNA:   3'- -CAUCUGGUCGGCCUUUUCCUGUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 73739 0.8 0.299893
Target:  5'- -aGGGCCGGCUGGAGGAGG--GCCACu -3'
miRNA:   3'- caUCUGGUCGGCCUUUUCCugUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 8046 0.78 0.399386
Target:  5'- gGUGGACCcaaAGCCGcgcggcccgcgcgcaGAGGGGGGCACCGCc -3'
miRNA:   3'- -CAUCUGG---UCGGC---------------CUUUUCCUGUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 50283 0.77 0.441293
Target:  5'- cGUGGGCCgccuAGCCGGGcuaguGGGCGCCAUg -3'
miRNA:   3'- -CAUCUGG----UCGGCCUuuu--CCUGUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 76416 0.76 0.469927
Target:  5'- -cGGGCC-GCCGGAGgagcccGGGGugGCCGCg -3'
miRNA:   3'- caUCUGGuCGGCCUU------UUCCugUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 70205 0.76 0.473816
Target:  5'- -cGGACCAGCUgcugcgcgugcugcuGGAGAAGG-CGCCGCc -3'
miRNA:   3'- caUCUGGUCGG---------------CCUUUUCCuGUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 56640 0.75 0.529828
Target:  5'- --cGAgCAGCCGGccGAGGGugGCCACc -3'
miRNA:   3'- cauCUgGUCGGCCu-UUUCCugUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 33945 0.75 0.540096
Target:  5'- -cAGGCCcGCCGGAgaaGAAGGACagaguuagACCGCg -3'
miRNA:   3'- caUCUGGuCGGCCU---UUUCCUG--------UGGUG- -5'
6669 5' -53.1 NC_001847.1 + 14219 0.75 0.549395
Target:  5'- -cAGGCCGGCCGGGGgcgugguGAGGGCAaacgccgagcCCGCu -3'
miRNA:   3'- caUCUGGUCGGCCUU-------UUCCUGU----------GGUG- -5'
6669 5' -53.1 NC_001847.1 + 15109 0.75 0.550431
Target:  5'- -gGGGgCGGUCGGggGAGGGCcuagGCCGCu -3'
miRNA:   3'- caUCUgGUCGGCCuuUUCCUG----UGGUG- -5'
6669 5' -53.1 NC_001847.1 + 98741 0.75 0.550431
Target:  5'- -gGGGCCggGGCCGGGGccGGGGCAUCGCu -3'
miRNA:   3'- caUCUGG--UCGGCCUUu-UCCUGUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 59923 0.75 0.550431
Target:  5'- --cGGCgagAGCCGGcGGAAGGGCGCCACg -3'
miRNA:   3'- cauCUGg--UCGGCC-UUUUCCUGUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 111300 0.74 0.589137
Target:  5'- -gAGGCCAGCCGGcucGGGGCcgugcgcgcgcuggACCGCg -3'
miRNA:   3'- caUCUGGUCGGCCuuuUCCUG--------------UGGUG- -5'
6669 5' -53.1 NC_001847.1 + 59485 0.74 0.592301
Target:  5'- cGUAGuccCCAGCCGGcAGGGGGuGCGCCGa -3'
miRNA:   3'- -CAUCu--GGUCGGCC-UUUUCC-UGUGGUg -5'
6669 5' -53.1 NC_001847.1 + 118915 0.73 0.645272
Target:  5'- -gGGGCCgaGGCCGGGAcgcgGAGGcugcaACGCCGCa -3'
miRNA:   3'- caUCUGG--UCGGCCUU----UUCC-----UGUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 17801 0.73 0.666444
Target:  5'- -cGGGCCccAGCgGGcGGGAGGGCGCCAUg -3'
miRNA:   3'- caUCUGG--UCGgCC-UUUUCCUGUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 75021 0.73 0.666444
Target:  5'- -gGGGCCAGCgGGcAGAAGG-CGCCGu -3'
miRNA:   3'- caUCUGGUCGgCC-UUUUCCuGUGGUg -5'
6669 5' -53.1 NC_001847.1 + 88243 0.73 0.666444
Target:  5'- -gAGGCCGGCgCGGcgcGGGGCGCCGg -3'
miRNA:   3'- caUCUGGUCG-GCCuuuUCCUGUGGUg -5'
6669 5' -53.1 NC_001847.1 + 99166 0.73 0.67699
Target:  5'- uGUGGcGCCAGCCGGc--GGGA-GCCACa -3'
miRNA:   3'- -CAUC-UGGUCGGCCuuuUCCUgUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 21565 0.72 0.686448
Target:  5'- -aGGGCCggggagaGGgCGGGAGAGGGgGCCGCg -3'
miRNA:   3'- caUCUGG-------UCgGCCUUUUCCUgUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.