miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6672 3' -44.2 NC_001847.1 + 54524 0.66 0.999999
Target:  5'- cGGUggg-GCggGGCCGUCcgggggcgcaGACGGCGGg -3'
miRNA:   3'- -CUAaauaUGaaCCGGCAG----------UUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 56727 0.66 0.999999
Target:  5'- ----------cGGCCGaugcUCAGCAACGAg -3'
miRNA:   3'- cuaaauaugaaCCGGC----AGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 78341 0.66 0.999998
Target:  5'- ------gGCUUGGgCGccgCGGCGGCGAa -3'
miRNA:   3'- cuaaauaUGAACCgGCa--GUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 53869 0.66 0.999998
Target:  5'- ----gGUGCUguggggcGGCCGUCucuccggaaAGCAGCGGc -3'
miRNA:   3'- cuaaaUAUGAa------CCGGCAG---------UUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 95899 0.66 0.999998
Target:  5'- ------aGCUcgagaUGGCUGUCAGCGuCGAc -3'
miRNA:   3'- cuaaauaUGA-----ACCGGCAGUUGUuGCU- -5'
6672 3' -44.2 NC_001847.1 + 82317 0.66 0.999998
Target:  5'- ----aAUGCgggcggGGUCGcCGGCGACGAg -3'
miRNA:   3'- cuaaaUAUGaa----CCGGCaGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 114593 0.66 0.999997
Target:  5'- ---gUGUACgUGGCCGUCccCGcCGAg -3'
miRNA:   3'- cuaaAUAUGaACCGGCAGuuGUuGCU- -5'
6672 3' -44.2 NC_001847.1 + 27720 0.66 0.999997
Target:  5'- ------gGCaaGGgCGUCAGCGGCGGa -3'
miRNA:   3'- cuaaauaUGaaCCgGCAGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 81786 0.66 0.999996
Target:  5'- ----gGUGCccgcGGCCGcCAGCAGCGc -3'
miRNA:   3'- cuaaaUAUGaa--CCGGCaGUUGUUGCu -5'
6672 3' -44.2 NC_001847.1 + 14072 0.66 0.999996
Target:  5'- ----gGUGCUUgGGCCGcUCGugGACa- -3'
miRNA:   3'- cuaaaUAUGAA-CCGGC-AGUugUUGcu -5'
6672 3' -44.2 NC_001847.1 + 59675 0.66 0.999995
Target:  5'- ----cGUGCgcucUGGCCccucccccccgGUCGGCAGCGGg -3'
miRNA:   3'- cuaaaUAUGa---ACCGG-----------CAGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 94706 0.67 0.999989
Target:  5'- ----aGUAC-UGGCgCuUCAGCAGCGAg -3'
miRNA:   3'- cuaaaUAUGaACCG-GcAGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 85563 0.67 0.999989
Target:  5'- ---aUGUcCUcGGCCGUCGucuCAACGGc -3'
miRNA:   3'- cuaaAUAuGAaCCGGCAGUu--GUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 126597 0.67 0.999984
Target:  5'- -----------cGCCGUCGACGACGAc -3'
miRNA:   3'- cuaaauaugaacCGGCAGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 134030 0.67 0.999984
Target:  5'- ----gGUGCUggaGGCCG-CGGCGGCGc -3'
miRNA:   3'- cuaaaUAUGAa--CCGGCaGUUGUUGCu -5'
6672 3' -44.2 NC_001847.1 + 66041 0.67 0.999984
Target:  5'- gGAggUAUACgc-GCaCGUCGGCGGCGGc -3'
miRNA:   3'- -CUaaAUAUGaacCG-GCAGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 31217 0.67 0.999984
Target:  5'- ----gGUGCUggaGGCCG-CGGCGGCGc -3'
miRNA:   3'- cuaaaUAUGAa--CCGGCaGUUGUUGCu -5'
6672 3' -44.2 NC_001847.1 + 35891 0.67 0.999984
Target:  5'- ---aUAUACUcccGcGCCGgcugCGACAACGAg -3'
miRNA:   3'- cuaaAUAUGAa--C-CGGCa---GUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 67293 0.67 0.999978
Target:  5'- ------gACUuggUGGCCG-CGGCGACGGc -3'
miRNA:   3'- cuaaauaUGA---ACCGGCaGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 84022 0.67 0.999978
Target:  5'- ------cGCcugUGGUgGUCGACGGCGAg -3'
miRNA:   3'- cuaaauaUGa--ACCGgCAGUUGUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.