miRNA display CGI


Results 1 - 20 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6672 5' -62.3 NC_001847.1 + 35937 0.65 0.648166
Target:  5'- cGG-CGCGCCGCCGcgcggccgccucgcGCgAGGACCa--- -3'
miRNA:   3'- -CCaGCGCGGCGGC--------------CGgUCUUGGccag -5'
6672 5' -62.3 NC_001847.1 + 122777 0.66 0.5923
Target:  5'- aGGcCGCaGCCGCCGacgcucccgaGCCAGGcccACCGcUCa -3'
miRNA:   3'- -CCaGCG-CGGCGGC----------CGGUCU---UGGCcAG- -5'
6672 5' -62.3 NC_001847.1 + 62974 0.66 0.602072
Target:  5'- -aUCGgGCCGCCGGCUuu-GCaGGUUu -3'
miRNA:   3'- ccAGCgCGGCGGCCGGucuUGgCCAG- -5'
6672 5' -62.3 NC_001847.1 + 114077 0.66 0.5923
Target:  5'- aGUCGgGCCccGCCccagGGCCucAGGGCCGGg- -3'
miRNA:   3'- cCAGCgCGG--CGG----CCGG--UCUUGGCCag -5'
6672 5' -62.3 NC_001847.1 + 42669 0.66 0.611865
Target:  5'- aGGcCGcCGCCGCgcUGGCCAucGACCGGcCc -3'
miRNA:   3'- -CCaGC-GCGGCG--GCCGGUc-UUGGCCaG- -5'
6672 5' -62.3 NC_001847.1 + 132780 0.66 0.602072
Target:  5'- aGcCGcCGCCGCCgacgcGGCCGG-GCCGG-Cg -3'
miRNA:   3'- cCaGC-GCGGCGG-----CCGGUCuUGGCCaG- -5'
6672 5' -62.3 NC_001847.1 + 102514 0.66 0.5923
Target:  5'- aGGgcagaGCGCgCGCCGcGCCGGuGAUCGcGUCc -3'
miRNA:   3'- -CCag---CGCG-GCGGC-CGGUC-UUGGC-CAG- -5'
6672 5' -62.3 NC_001847.1 + 131333 0.66 0.611865
Target:  5'- cGGcagCGCGCCGCCGccGCCc-GGCCGcGUg -3'
miRNA:   3'- -CCa--GCGCGGCGGC--CGGucUUGGC-CAg -5'
6672 5' -62.3 NC_001847.1 + 73719 0.66 0.602072
Target:  5'- cGG-CGCgGCCGCgGGCgucgAGGGCCGGc- -3'
miRNA:   3'- -CCaGCG-CGGCGgCCGg---UCUUGGCCag -5'
6672 5' -62.3 NC_001847.1 + 131659 0.66 0.602072
Target:  5'- cGcCGCuGCCGCCGGUCGGGgacGCCauGGcCg -3'
miRNA:   3'- cCaGCG-CGGCGGCCGGUCU---UGG--CCaG- -5'
6672 5' -62.3 NC_001847.1 + 119921 0.66 0.599138
Target:  5'- cGG-CGCGUacuucgucuauacgCGCCGGCgCGGuGCgGGUCc -3'
miRNA:   3'- -CCaGCGCG--------------GCGGCCG-GUCuUGgCCAG- -5'
6672 5' -62.3 NC_001847.1 + 63427 0.66 0.5923
Target:  5'- --aCGCGgCGCCGGC--GGGCCGG-Cg -3'
miRNA:   3'- ccaGCGCgGCGGCCGguCUUGGCCaG- -5'
6672 5' -62.3 NC_001847.1 + 104374 0.66 0.5923
Target:  5'- --aCGCGCCGCgaGGCCAGca-CGG-Cg -3'
miRNA:   3'- ccaGCGCGGCGg-CCGGUCuugGCCaG- -5'
6672 5' -62.3 NC_001847.1 + 39389 0.66 0.5923
Target:  5'- cGGccCGCGCCGCCccccgcGCCAGAG-CGGcCc -3'
miRNA:   3'- -CCa-GCGCGGCGGc-----CGGUCUUgGCCaG- -5'
6672 5' -62.3 NC_001847.1 + 36084 0.66 0.611865
Target:  5'- uGGaCGCGCgGCUGGC-GGAGCgCGG-Cg -3'
miRNA:   3'- -CCaGCGCGgCGGCCGgUCUUG-GCCaG- -5'
6672 5' -62.3 NC_001847.1 + 70926 0.66 0.608925
Target:  5'- -uUCGCGCCGCCGcCCGGGcaccccgacccGCgcauguucccgccgCGGUCg -3'
miRNA:   3'- ccAGCGCGGCGGCcGGUCU-----------UG--------------GCCAG- -5'
6672 5' -62.3 NC_001847.1 + 92428 0.66 0.611865
Target:  5'- cGGcCGC-CCGCCGcGCCAaauccGGGCUGGg- -3'
miRNA:   3'- -CCaGCGcGGCGGC-CGGU-----CUUGGCCag -5'
6672 5' -62.3 NC_001847.1 + 35011 0.66 0.602072
Target:  5'- cGGcCGCGgaCGUgGGCCAGcuGACgCGGUUg -3'
miRNA:   3'- -CCaGCGCg-GCGgCCGGUC--UUG-GCCAG- -5'
6672 5' -62.3 NC_001847.1 + 39443 0.66 0.5923
Target:  5'- cGGccCGCGCCGCCccccgcGCCAGAG-CGGcCc -3'
miRNA:   3'- -CCa-GCGCGGCGGc-----CGGUCUUgGCCaG- -5'
6672 5' -62.3 NC_001847.1 + 59113 0.66 0.602072
Target:  5'- cGUCGuCGCCGCCG-CCGcu-CCGGcCg -3'
miRNA:   3'- cCAGC-GCGGCGGCcGGUcuuGGCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.