miRNA display CGI


Results 1 - 20 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6672 5' -62.3 NC_001847.1 + 104579 0.73 0.271635
Target:  5'- --cCGCGCCGCggaaGGCCAGGucCCGcGUCg -3'
miRNA:   3'- ccaGCGCGGCGg---CCGGUCUu-GGC-CAG- -5'
6672 5' -62.3 NC_001847.1 + 43790 0.74 0.210487
Target:  5'- uGGaCGCGCgCGCCGGCgc--GCCGGUCg -3'
miRNA:   3'- -CCaGCGCG-GCGGCCGgucuUGGCCAG- -5'
6672 5' -62.3 NC_001847.1 + 95378 0.74 0.220648
Target:  5'- cGGacCGCGCCGCCggcucugaGGCCGGcGCCGGg- -3'
miRNA:   3'- -CCa-GCGCGGCGG--------CCGGUCuUGGCCag -5'
6672 5' -62.3 NC_001847.1 + 48417 0.74 0.231225
Target:  5'- gGGaCGCGUCGCCGGCgcuCGGGuACuCGGUCg -3'
miRNA:   3'- -CCaGCGCGGCGGCCG---GUCU-UG-GCCAG- -5'
6672 5' -62.3 NC_001847.1 + 63547 0.74 0.236672
Target:  5'- ---gGCGCCGCCugGGCCGGcGCCGGg- -3'
miRNA:   3'- ccagCGCGGCGG--CCGGUCuUGGCCag -5'
6672 5' -62.3 NC_001847.1 + 68338 0.73 0.242226
Target:  5'- --aCGCGCCGCuCGGCgucguGGuAGCCGGUCg -3'
miRNA:   3'- ccaGCGCGGCG-GCCGg----UC-UUGGCCAG- -5'
6672 5' -62.3 NC_001847.1 + 19687 0.73 0.247888
Target:  5'- gGGUgCGCGCCGUCGGUuuGAauGCCGGcUCc -3'
miRNA:   3'- -CCA-GCGCGGCGGCCGguCU--UGGCC-AG- -5'
6672 5' -62.3 NC_001847.1 + 59145 0.73 0.253659
Target:  5'- uGGUCccaguuguaccgGCGCCGCuUGGCCAGGgggcGgCGGUCg -3'
miRNA:   3'- -CCAG------------CGCGGCG-GCCGGUCU----UgGCCAG- -5'
6672 5' -62.3 NC_001847.1 + 97763 0.73 0.271635
Target:  5'- -cUUGCcaGCCGCCGGCCgccagcagagagAGGACCGGcUCg -3'
miRNA:   3'- ccAGCG--CGGCGGCCGG------------UCUUGGCC-AG- -5'
6672 5' -62.3 NC_001847.1 + 46754 0.75 0.196002
Target:  5'- cGG-CGCGcCCGCCcGCCgcgcGGGGCCGGUCc -3'
miRNA:   3'- -CCaGCGC-GGCGGcCGG----UCUUGGCCAG- -5'
6672 5' -62.3 NC_001847.1 + 113506 0.75 0.186836
Target:  5'- cGGUCGCGCCcggGCgCGGCCcGcGCCGGcCa -3'
miRNA:   3'- -CCAGCGCGG---CG-GCCGGuCuUGGCCaG- -5'
6672 5' -62.3 NC_001847.1 + 16917 0.75 0.186836
Target:  5'- --cCGgGCCGCuCGGCgCAGAcGCCGGUCu -3'
miRNA:   3'- ccaGCgCGGCG-GCCG-GUCU-UGGCCAG- -5'
6672 5' -62.3 NC_001847.1 + 5353 0.78 0.129431
Target:  5'- uGGUCGCGCgGCgCGGCCGGGcccaggcuccGgCGGUCc -3'
miRNA:   3'- -CCAGCGCGgCG-GCCGGUCU----------UgGCCAG- -5'
6672 5' -62.3 NC_001847.1 + 48198 0.78 0.132688
Target:  5'- --cCGCGCCGgCGGCCAGGGCCGa-- -3'
miRNA:   3'- ccaGCGCGGCgGCCGGUCUUGGCcag -5'
6672 5' -62.3 NC_001847.1 + 45252 0.77 0.13602
Target:  5'- -uUUGCGCCGCCGGCguGAGCgCGG-Cg -3'
miRNA:   3'- ccAGCGCGGCGGCCGguCUUG-GCCaG- -5'
6672 5' -62.3 NC_001847.1 + 119342 0.77 0.139429
Target:  5'- uGGUUuCGCUGCCGGCCGGGgacuGCUGGUUc -3'
miRNA:   3'- -CCAGcGCGGCGGCCGGUCU----UGGCCAG- -5'
6672 5' -62.3 NC_001847.1 + 134374 0.76 0.169633
Target:  5'- aGGcCgGCGCCGCCGGCgGcGGGCCGGcCu -3'
miRNA:   3'- -CCaG-CGCGGCGGCCGgU-CUUGGCCaG- -5'
6672 5' -62.3 NC_001847.1 + 59910 0.76 0.169633
Target:  5'- cGG-CGCGCgCGCgCGGCgAGAGCCGG-Cg -3'
miRNA:   3'- -CCaGCGCG-GCG-GCCGgUCUUGGCCaG- -5'
6672 5' -62.3 NC_001847.1 + 104041 0.76 0.173796
Target:  5'- --gCGCGCCGCCcgcaGGCCAGGuacACCGGcCg -3'
miRNA:   3'- ccaGCGCGGCGG----CCGGUCU---UGGCCaG- -5'
6672 5' -62.3 NC_001847.1 + 132398 0.75 0.182396
Target:  5'- ---gGCGCCGCCGcGCCGGGccggggGCCGGUg -3'
miRNA:   3'- ccagCGCGGCGGC-CGGUCU------UGGCCAg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.