Results 1 - 20 of 385 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6672 | 5' | -62.3 | NC_001847.1 | + | 5353 | 0.78 | 0.129431 |
Target: 5'- uGGUCGCGCgGCgCGGCCGGGcccaggcuccGgCGGUCc -3' miRNA: 3'- -CCAGCGCGgCG-GCCGGUCU----------UgGCCAG- -5' |
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6672 | 5' | -62.3 | NC_001847.1 | + | 97763 | 0.73 | 0.271635 |
Target: 5'- -cUUGCcaGCCGCCGGCCgccagcagagagAGGACCGGcUCg -3' miRNA: 3'- ccAGCG--CGGCGGCCGG------------UCUUGGCC-AG- -5' |
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6672 | 5' | -62.3 | NC_001847.1 | + | 59145 | 0.73 | 0.253659 |
Target: 5'- uGGUCccaguuguaccgGCGCCGCuUGGCCAGGgggcGgCGGUCg -3' miRNA: 3'- -CCAG------------CGCGGCG-GCCGGUCU----UgGCCAG- -5' |
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6672 | 5' | -62.3 | NC_001847.1 | + | 19687 | 0.73 | 0.247888 |
Target: 5'- gGGUgCGCGCCGUCGGUuuGAauGCCGGcUCc -3' miRNA: 3'- -CCA-GCGCGGCGGCCGguCU--UGGCC-AG- -5' |
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6672 | 5' | -62.3 | NC_001847.1 | + | 68338 | 0.73 | 0.242226 |
Target: 5'- --aCGCGCCGCuCGGCgucguGGuAGCCGGUCg -3' miRNA: 3'- ccaGCGCGGCG-GCCGg----UC-UUGGCCAG- -5' |
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6672 | 5' | -62.3 | NC_001847.1 | + | 63547 | 0.74 | 0.236672 |
Target: 5'- ---gGCGCCGCCugGGCCGGcGCCGGg- -3' miRNA: 3'- ccagCGCGGCGG--CCGGUCuUGGCCag -5' |
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6672 | 5' | -62.3 | NC_001847.1 | + | 48417 | 0.74 | 0.231225 |
Target: 5'- gGGaCGCGUCGCCGGCgcuCGGGuACuCGGUCg -3' miRNA: 3'- -CCaGCGCGGCGGCCG---GUCU-UG-GCCAG- -5' |
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6672 | 5' | -62.3 | NC_001847.1 | + | 95378 | 0.74 | 0.220648 |
Target: 5'- cGGacCGCGCCGCCggcucugaGGCCGGcGCCGGg- -3' miRNA: 3'- -CCa-GCGCGGCGG--------CCGGUCuUGGCCag -5' |
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6672 | 5' | -62.3 | NC_001847.1 | + | 43790 | 0.74 | 0.210487 |
Target: 5'- uGGaCGCGCgCGCCGGCgc--GCCGGUCg -3' miRNA: 3'- -CCaGCGCG-GCGGCCGgucuUGGCCAG- -5' |
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6672 | 5' | -62.3 | NC_001847.1 | + | 46754 | 0.75 | 0.196002 |
Target: 5'- cGG-CGCGcCCGCCcGCCgcgcGGGGCCGGUCc -3' miRNA: 3'- -CCaGCGC-GGCGGcCGG----UCUUGGCCAG- -5' |
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6672 | 5' | -62.3 | NC_001847.1 | + | 113506 | 0.75 | 0.186836 |
Target: 5'- cGGUCGCGCCcggGCgCGGCCcGcGCCGGcCa -3' miRNA: 3'- -CCAGCGCGG---CG-GCCGGuCuUGGCCaG- -5' |
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6672 | 5' | -62.3 | NC_001847.1 | + | 16917 | 0.75 | 0.186836 |
Target: 5'- --cCGgGCCGCuCGGCgCAGAcGCCGGUCu -3' miRNA: 3'- ccaGCgCGGCG-GCCG-GUCU-UGGCCAG- -5' |
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6672 | 5' | -62.3 | NC_001847.1 | + | 132398 | 0.75 | 0.182396 |
Target: 5'- ---gGCGCCGCCGcGCCGGGccggggGCCGGUg -3' miRNA: 3'- ccagCGCGGCGGC-CGGUCU------UGGCCAg -5' |
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6672 | 5' | -62.3 | NC_001847.1 | + | 104041 | 0.76 | 0.173796 |
Target: 5'- --gCGCGCCGCCcgcaGGCCAGGuacACCGGcCg -3' miRNA: 3'- ccaGCGCGGCGG----CCGGUCU---UGGCCaG- -5' |
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6672 | 5' | -62.3 | NC_001847.1 | + | 59910 | 0.76 | 0.169633 |
Target: 5'- cGG-CGCGCgCGCgCGGCgAGAGCCGG-Cg -3' miRNA: 3'- -CCaGCGCG-GCG-GCCGgUCUUGGCCaG- -5' |
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6672 | 5' | -62.3 | NC_001847.1 | + | 134374 | 0.76 | 0.169633 |
Target: 5'- aGGcCgGCGCCGCCGGCgGcGGGCCGGcCu -3' miRNA: 3'- -CCaG-CGCGGCGGCCGgU-CUUGGCCaG- -5' |
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6672 | 5' | -62.3 | NC_001847.1 | + | 119342 | 0.77 | 0.139429 |
Target: 5'- uGGUUuCGCUGCCGGCCGGGgacuGCUGGUUc -3' miRNA: 3'- -CCAGcGCGGCGGCCGGUCU----UGGCCAG- -5' |
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6672 | 5' | -62.3 | NC_001847.1 | + | 45252 | 0.77 | 0.13602 |
Target: 5'- -uUUGCGCCGCCGGCguGAGCgCGG-Cg -3' miRNA: 3'- ccAGCGCGGCGGCCGguCUUG-GCCaG- -5' |
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6672 | 5' | -62.3 | NC_001847.1 | + | 48198 | 0.78 | 0.132688 |
Target: 5'- --cCGCGCCGgCGGCCAGGGCCGa-- -3' miRNA: 3'- ccaGCGCGGCgGCCGGUCUUGGCcag -5' |
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6672 | 5' | -62.3 | NC_001847.1 | + | 115876 | 1.1 | 0.000685 |
Target: 5'- aGGUCGCGCCGCCGGCCAGAACCGGUCc -3' miRNA: 3'- -CCAGCGCGGCGGCCGGUCUUGGCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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