miRNA display CGI


Results 1 - 20 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6672 5' -62.3 NC_001847.1 + 146 0.72 0.317531
Target:  5'- -cUCGgGCC-CCGGCCGGGggGCCGGg- -3'
miRNA:   3'- ccAGCgCGGcGGCCGGUCU--UGGCCag -5'
6672 5' -62.3 NC_001847.1 + 769 0.68 0.515566
Target:  5'- cGGcC-CGCCGCCGGC-GGcGCCGGcCu -3'
miRNA:   3'- -CCaGcGCGGCGGCCGgUCuUGGCCaG- -5'
6672 5' -62.3 NC_001847.1 + 907 0.71 0.353744
Target:  5'- cGGcCGCcgGCCGCCGcccGCCGGcGCCGGg- -3'
miRNA:   3'- -CCaGCG--CGGCGGC---CGGUCuUGGCCag -5'
6672 5' -62.3 NC_001847.1 + 1228 0.76 0.173796
Target:  5'- --gCGCGCCGCCcgcaGGCCAGGuacACCGGcCg -3'
miRNA:   3'- ccaGCGCGGCGG----CCGGUCU---UGGCCaG- -5'
6672 5' -62.3 NC_001847.1 + 1561 0.66 0.5923
Target:  5'- --aCGCGCCGCgaGGCCAGca-CGG-Cg -3'
miRNA:   3'- ccaGCGCGGCGg-CCGGUCuugGCCaG- -5'
6672 5' -62.3 NC_001847.1 + 1592 0.69 0.434505
Target:  5'- --gCGCGCCGCUcgGGCCAGcGCgCGG-Cg -3'
miRNA:   3'- ccaGCGCGGCGG--CCGGUCuUG-GCCaG- -5'
6672 5' -62.3 NC_001847.1 + 1766 0.73 0.271635
Target:  5'- --cCGCGCCGCggaaGGCCAGGucCCGcGUCg -3'
miRNA:   3'- ccaGCGCGGCGg---CCGGUCUu-GGC-CAG- -5'
6672 5' -62.3 NC_001847.1 + 2109 0.69 0.425954
Target:  5'- cGG-CGgGCCGCgaucuCGGCCAGcGCCucggGGUCg -3'
miRNA:   3'- -CCaGCgCGGCG-----GCCGGUCuUGG----CCAG- -5'
6672 5' -62.3 NC_001847.1 + 2345 0.66 0.641299
Target:  5'- cGGcUCcCGCCgcGCCGGCCc-GGCCGcGUCg -3'
miRNA:   3'- -CC-AGcGCGG--CGGCCGGucUUGGC-CAG- -5'
6672 5' -62.3 NC_001847.1 + 2891 0.7 0.392778
Target:  5'- cGGgUGCGUCGCCguucgGGCCGGA--CGGUCg -3'
miRNA:   3'- -CCaGCGCGGCGG-----CCGGUCUugGCCAG- -5'
6672 5' -62.3 NC_001847.1 + 2971 0.71 0.331673
Target:  5'- cGG-CGCGCagCGCC-GCCGGGGCCGG-Cg -3'
miRNA:   3'- -CCaGCGCG--GCGGcCGGUCUUGGCCaG- -5'
6672 5' -62.3 NC_001847.1 + 3110 0.67 0.572842
Target:  5'- aGGcCGCGgcCCGCCgcGGCCgAGAgcACCGGg- -3'
miRNA:   3'- -CCaGCGC--GGCGG--CCGG-UCU--UGGCCag -5'
6672 5' -62.3 NC_001847.1 + 3272 0.68 0.515566
Target:  5'- ---gGCGCCGCgCGGCCGgcGAGCaCGG-Cg -3'
miRNA:   3'- ccagCGCGGCG-GCCGGU--CUUG-GCCaG- -5'
6672 5' -62.3 NC_001847.1 + 3322 0.68 0.478688
Target:  5'- ---gGCGCCGCUGccGCCGGcGCCGGcCu -3'
miRNA:   3'- ccagCGCGGCGGC--CGGUCuUGGCCaG- -5'
6672 5' -62.3 NC_001847.1 + 3721 0.69 0.451901
Target:  5'- -aUCGCGCgCGCCGGCCAcGGcgcgcACgCGGcCg -3'
miRNA:   3'- ccAGCGCG-GCGGCCGGU-CU-----UG-GCCaG- -5'
6672 5' -62.3 NC_001847.1 + 3789 0.69 0.437954
Target:  5'- --cCGCGCCGCCgaagcgcacgcGGCCGGGcggcggcggcgcgcuGCCGGg- -3'
miRNA:   3'- ccaGCGCGGCGG-----------CCGGUCU---------------UGGCCag -5'
6672 5' -62.3 NC_001847.1 + 3845 0.68 0.506233
Target:  5'- -uUCGCGCCGCC--CCAGAcguagacggcGCCGGg- -3'
miRNA:   3'- ccAGCGCGGCGGccGGUCU----------UGGCCag -5'
6672 5' -62.3 NC_001847.1 + 3888 0.69 0.451022
Target:  5'- cGUCGCGCggCGCCGcggcguaGCCAGcgcgggcGCCGGUUg -3'
miRNA:   3'- cCAGCGCG--GCGGC-------CGGUCu------UGGCCAG- -5'
6672 5' -62.3 NC_001847.1 + 4236 0.67 0.533483
Target:  5'- cGGcgCGCGCCggcacgaGCUGcGCCAGcAGCCaGUCg -3'
miRNA:   3'- -CCa-GCGCGG-------CGGC-CGGUC-UUGGcCAG- -5'
6672 5' -62.3 NC_001847.1 + 4950 0.69 0.417504
Target:  5'- --cCGCGCCGCCcgucucuucaGGCCGGGcGCCcgcggGGUCg -3'
miRNA:   3'- ccaGCGCGGCGG----------CCGGUCU-UGG-----CCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.