miRNA display CGI


Results 1 - 20 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6672 5' -62.3 NC_001847.1 + 115876 1.1 0.000685
Target:  5'- aGGUCGCGCCGCCGGCCAGAACCGGUCc -3'
miRNA:   3'- -CCAGCGCGGCGGCCGGUCUUGGCCAG- -5'
6672 5' -62.3 NC_001847.1 + 61439 0.78 0.11423
Target:  5'- cGGcCGCGCCGCCGGgCGcggcGAGgCGGUCg -3'
miRNA:   3'- -CCaGCGCGGCGGCCgGU----CUUgGCCAG- -5'
6672 5' -62.3 NC_001847.1 + 91712 0.78 0.11423
Target:  5'- gGGUCGCGaCGCCGGCCAGcAGCagcagcgcgaGGUCc -3'
miRNA:   3'- -CCAGCGCgGCGGCCGGUC-UUGg---------CCAG- -5'
6672 5' -62.3 NC_001847.1 + 100544 0.78 0.116837
Target:  5'- cGG-CGCGCCGCCGcGCCAGcGCCcgggccuugcgcaGGUCg -3'
miRNA:   3'- -CCaGCGCGGCGGC-CGGUCuUGG-------------CCAG- -5'
6672 5' -62.3 NC_001847.1 + 88103 0.78 0.120099
Target:  5'- cGGUgGCGCgGCUGGCCGGAAUcaCGGUg -3'
miRNA:   3'- -CCAgCGCGgCGGCCGGUCUUG--GCCAg -5'
6672 5' -62.3 NC_001847.1 + 14794 0.78 0.120099
Target:  5'- cGGUCccguuguaGCGCCGcCCGGCCGGgAGCUGGUg -3'
miRNA:   3'- -CCAG--------CGCGGC-GGCCGGUC-UUGGCCAg -5'
6672 5' -62.3 NC_001847.1 + 5353 0.78 0.129431
Target:  5'- uGGUCGCGCgGCgCGGCCGGGcccaggcuccGgCGGUCc -3'
miRNA:   3'- -CCAGCGCGgCG-GCCGGUCU----------UgGCCAG- -5'
6672 5' -62.3 NC_001847.1 + 48198 0.78 0.132688
Target:  5'- --cCGCGCCGgCGGCCAGGGCCGa-- -3'
miRNA:   3'- ccaGCGCGGCgGCCGGUCUUGGCcag -5'
6672 5' -62.3 NC_001847.1 + 45252 0.77 0.13602
Target:  5'- -uUUGCGCCGCCGGCguGAGCgCGG-Cg -3'
miRNA:   3'- ccAGCGCGGCGGCCGguCUUG-GCCaG- -5'
6672 5' -62.3 NC_001847.1 + 119342 0.77 0.139429
Target:  5'- uGGUUuCGCUGCCGGCCGGGgacuGCUGGUUc -3'
miRNA:   3'- -CCAGcGCGGCGGCCGGUCU----UGGCCAG- -5'
6672 5' -62.3 NC_001847.1 + 84646 0.77 0.146482
Target:  5'- uGGccCGCGCCGUugauagauaCGGCCGGAccggcGCCGGUCu -3'
miRNA:   3'- -CCa-GCGCGGCG---------GCCGGUCU-----UGGCCAG- -5'
6672 5' -62.3 NC_001847.1 + 101950 0.77 0.15386
Target:  5'- --cCGCGCCGCCaagucgGGCgCAGAGCCGGcCa -3'
miRNA:   3'- ccaGCGCGGCGG------CCG-GUCUUGGCCaG- -5'
6672 5' -62.3 NC_001847.1 + 42967 0.77 0.15386
Target:  5'- gGGgggCGgGCCGCCGGCCGGc-CCGGg- -3'
miRNA:   3'- -CCa--GCgCGGCGGCCGGUCuuGGCCag -5'
6672 5' -62.3 NC_001847.1 + 59910 0.76 0.169633
Target:  5'- cGG-CGCGCgCGCgCGGCgAGAGCCGG-Cg -3'
miRNA:   3'- -CCaGCGCG-GCG-GCCGgUCUUGGCCaG- -5'
6672 5' -62.3 NC_001847.1 + 134374 0.76 0.169633
Target:  5'- aGGcCgGCGCCGCCGGCgGcGGGCCGGcCu -3'
miRNA:   3'- -CCaG-CGCGGCGGCCGgU-CUUGGCCaG- -5'
6672 5' -62.3 NC_001847.1 + 31561 0.76 0.169633
Target:  5'- aGGcCgGCGCCGCCGGCgGcGGGCCGGcCu -3'
miRNA:   3'- -CCaG-CGCGGCGGCCGgU-CUUGGCCaG- -5'
6672 5' -62.3 NC_001847.1 + 104041 0.76 0.173796
Target:  5'- --gCGCGCCGCCcgcaGGCCAGGuacACCGGcCg -3'
miRNA:   3'- ccaGCGCGGCGG----CCGGUCU---UGGCCaG- -5'
6672 5' -62.3 NC_001847.1 + 1228 0.76 0.173796
Target:  5'- --gCGCGCCGCCcgcaGGCCAGGuacACCGGcCg -3'
miRNA:   3'- ccaGCGCGGCGG----CCGGUCU---UGGCCaG- -5'
6672 5' -62.3 NC_001847.1 + 67490 0.76 0.17805
Target:  5'- --cCGCGCCGCCGcGCCccucgacgAGGGCaCGGUCg -3'
miRNA:   3'- ccaGCGCGGCGGC-CGG--------UCUUG-GCCAG- -5'
6672 5' -62.3 NC_001847.1 + 132398 0.75 0.182396
Target:  5'- ---gGCGCCGCCGcGCCGGGccggggGCCGGUg -3'
miRNA:   3'- ccagCGCGGCGGC-CGGUCU------UGGCCAg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.