miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6673 5' -55.3 NC_001847.1 + 117473 0.66 0.909323
Target:  5'- uGCCcggcGGACCGCgagccGCCGACGUcGUCGa -3'
miRNA:   3'- uUGGaa--CCUGGUG-----CGGUUGCAcCAGU- -5'
6673 5' -55.3 NC_001847.1 + 102086 0.66 0.909323
Target:  5'- -----cGGGCCGCGCgCGACccGGUCAa -3'
miRNA:   3'- uuggaaCCUGGUGCG-GUUGcaCCAGU- -5'
6673 5' -55.3 NC_001847.1 + 108511 0.66 0.903008
Target:  5'- cAGCgCUUGGAgcacgagggcuuUCGCGCCcACGUGGcCGu -3'
miRNA:   3'- -UUG-GAACCU------------GGUGCGGuUGCACCaGU- -5'
6673 5' -55.3 NC_001847.1 + 88546 0.66 0.896449
Target:  5'- cGCCgcGaGGCCGCGCCGGCG-GGg-- -3'
miRNA:   3'- uUGGaaC-CUGGUGCGGUUGCaCCagu -5'
6673 5' -55.3 NC_001847.1 + 58576 0.66 0.896449
Target:  5'- aGAUCggGGGCCGgGCCGccggcuGCGUGGgCAg -3'
miRNA:   3'- -UUGGaaCCUGGUgCGGU------UGCACCaGU- -5'
6673 5' -55.3 NC_001847.1 + 44771 0.66 0.896449
Target:  5'- gGGCCgUGGuCCGCGuCCAGCa-GGUCGc -3'
miRNA:   3'- -UUGGaACCuGGUGC-GGUUGcaCCAGU- -5'
6673 5' -55.3 NC_001847.1 + 59431 0.66 0.896449
Target:  5'- cGCCccGGGCCugGCUGACGaccaacUGGUUg -3'
miRNA:   3'- uUGGaaCCUGGugCGGUUGC------ACCAGu -5'
6673 5' -55.3 NC_001847.1 + 99431 0.66 0.889649
Target:  5'- uAGCCgcauacGCUGCGCCAGCGUGGg-- -3'
miRNA:   3'- -UUGGaacc--UGGUGCGGUUGCACCagu -5'
6673 5' -55.3 NC_001847.1 + 4173 0.66 0.875343
Target:  5'- gGGCCUuguuuUGGGCCGCGCgccCGUGGg-- -3'
miRNA:   3'- -UUGGA-----ACCUGGUGCGguuGCACCagu -5'
6673 5' -55.3 NC_001847.1 + 84010 0.66 0.875343
Target:  5'- uGCUgaucGCCACGCCuGugGUGGUCGa -3'
miRNA:   3'- uUGGaaccUGGUGCGG-UugCACCAGU- -5'
6673 5' -55.3 NC_001847.1 + 63773 0.66 0.875343
Target:  5'- aGGCCcgGaGACCGCGCgGACGcgggcuuucUGGUCGc -3'
miRNA:   3'- -UUGGaaC-CUGGUGCGgUUGC---------ACCAGU- -5'
6673 5' -55.3 NC_001847.1 + 30719 0.66 0.875343
Target:  5'- -uCC-UGGAcgcCCGCGCgGACGUGGcCGa -3'
miRNA:   3'- uuGGaACCU---GGUGCGgUUGCACCaGU- -5'
6673 5' -55.3 NC_001847.1 + 70273 0.67 0.867847
Target:  5'- uACCgcgaGGACgCGCGCCuGGCGgGGUCGc -3'
miRNA:   3'- uUGGaa--CCUG-GUGCGG-UUGCaCCAGU- -5'
6673 5' -55.3 NC_001847.1 + 75717 0.67 0.867847
Target:  5'- gGGCCgcGGGCCGcCGCCGugGaUGGcCGa -3'
miRNA:   3'- -UUGGaaCCUGGU-GCGGUugC-ACCaGU- -5'
6673 5' -55.3 NC_001847.1 + 128036 0.67 0.867847
Target:  5'- gAGCCc--GGCCgugGCGCCuACGUGGUCu -3'
miRNA:   3'- -UUGGaacCUGG---UGCGGuUGCACCAGu -5'
6673 5' -55.3 NC_001847.1 + 20726 0.67 0.860129
Target:  5'- cGCUggcGGACCgcuucuaccucaACGCCGACGUGGaUCc -3'
miRNA:   3'- uUGGaa-CCUGG------------UGCGGUUGCACC-AGu -5'
6673 5' -55.3 NC_001847.1 + 116111 0.67 0.852196
Target:  5'- cGCC--GGGCC-UGCCGGCGgGGUCAc -3'
miRNA:   3'- uUGGaaCCUGGuGCGGUUGCaCCAGU- -5'
6673 5' -55.3 NC_001847.1 + 43781 0.67 0.852196
Target:  5'- uGCCggugcUGGACgcgCGCGCCGGCGcgccGGUCGa -3'
miRNA:   3'- uUGGa----ACCUG---GUGCGGUUGCa---CCAGU- -5'
6673 5' -55.3 NC_001847.1 + 91298 0.67 0.852196
Target:  5'- cAGCCUcGGGCUccagcaGCGCCAGCGcGG-CAa -3'
miRNA:   3'- -UUGGAaCCUGG------UGCGGUUGCaCCaGU- -5'
6673 5' -55.3 NC_001847.1 + 53322 0.67 0.852196
Target:  5'- gGACCUcgcgcUGGACCACGCCGcaGCGg----- -3'
miRNA:   3'- -UUGGA-----ACCUGGUGCGGU--UGCaccagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.