miRNA display CGI


Results 1 - 20 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6677 5' -61.1 NC_001847.1 + 53199 0.65 0.689645
Target:  5'- -cGCGGuguuaacgaauaugUUgCCGCCCuugauguccagguGCGCGAGGCCGc -3'
miRNA:   3'- caCGUU--------------GAgGGCGGG-------------CGCGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 103176 0.66 0.654059
Target:  5'- -cGCccCggggCCCGcCCCGCGCGccgcgcgccGGACCGc -3'
miRNA:   3'- caCGuuGa---GGGC-GGGCGCGC---------UCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 58393 0.66 0.644121
Target:  5'- cGUGCcc--CCCGCCCGaGCGcccGACCGu -3'
miRNA:   3'- -CACGuugaGGGCGGGCgCGCu--CUGGC- -5'
6677 5' -61.1 NC_001847.1 + 3881 0.66 0.634173
Target:  5'- -cGCAGCUCCCagcggagcgaGCCguugCGCGCGGuGGCgCGg -3'
miRNA:   3'- caCGUUGAGGG----------CGG----GCGCGCU-CUG-GC- -5'
6677 5' -61.1 NC_001847.1 + 9827 0.66 0.661007
Target:  5'- -cGCGGCUCCgaaaacgcccaaggCGCCCugGUGUG-GACCGa -3'
miRNA:   3'- caCGUUGAGG--------------GCGGG--CGCGCuCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 29575 0.66 0.634173
Target:  5'- cGUGcCGGCUgCCGUCU-UGCGAGACCc -3'
miRNA:   3'- -CAC-GUUGAgGGCGGGcGCGCUCUGGc -5'
6677 5' -61.1 NC_001847.1 + 64891 0.66 0.645115
Target:  5'- -aGCAACgccgcgcgcccgccgCCCGcCCCGCGCGucacACCa -3'
miRNA:   3'- caCGUUGa--------------GGGC-GGGCGCGCuc--UGGc -5'
6677 5' -61.1 NC_001847.1 + 42035 0.66 0.661007
Target:  5'- -cGCGGCgccuuuauagCCCGCCCcgcuuugcgggcgcGCGCGgGGGCCu -3'
miRNA:   3'- caCGUUGa---------GGGCGGG--------------CGCGC-UCUGGc -5'
6677 5' -61.1 NC_001847.1 + 59125 0.66 0.643126
Target:  5'- -cGCcGCUCCgG-CCGCGCGGGuggucccaguuguACCGg -3'
miRNA:   3'- caCGuUGAGGgCgGGCGCGCUC-------------UGGC- -5'
6677 5' -61.1 NC_001847.1 + 114237 0.66 0.634173
Target:  5'- cGUGUAGCgCUCGCCCGCGaCGcGcucgcugcccaGCCGa -3'
miRNA:   3'- -CACGUUGaGGGCGGGCGC-GCuC-----------UGGC- -5'
6677 5' -61.1 NC_001847.1 + 64444 0.66 0.641137
Target:  5'- -cGCGggcGCcCCCGCCgccgcccgcggcggCGCGgGGGGCCGa -3'
miRNA:   3'- caCGU---UGaGGGCGG--------------GCGCgCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 106691 0.66 0.654059
Target:  5'- -gGCGGCggCCCG-UCGCGCGGcGCCGc -3'
miRNA:   3'- caCGUUGa-GGGCgGGCGCGCUcUGGC- -5'
6677 5' -61.1 NC_001847.1 + 77199 0.66 0.654059
Target:  5'- -cGC-GCUgCUGCCCGCGaCGGaGCCGc -3'
miRNA:   3'- caCGuUGAgGGCGGGCGC-GCUcUGGC- -5'
6677 5' -61.1 NC_001847.1 + 109146 0.66 0.644121
Target:  5'- uGUGCGcgccuGCgcgCCCGCCCGCcCGcccuggucuGACCGc -3'
miRNA:   3'- -CACGU-----UGa--GGGCGGGCGcGCu--------CUGGC- -5'
6677 5' -61.1 NC_001847.1 + 103728 0.66 0.654059
Target:  5'- -gGCcGCcgCCCGCCgGCGcCGGGAagcCCGa -3'
miRNA:   3'- caCGuUGa-GGGCGGgCGC-GCUCU---GGC- -5'
6677 5' -61.1 NC_001847.1 + 64694 0.66 0.634173
Target:  5'- aUGUuuUUCCUG-CCGCGCGcGGCCGu -3'
miRNA:   3'- cACGuuGAGGGCgGGCGCGCuCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 77721 0.66 0.634173
Target:  5'- gGUGCGcGCUUggCGCgCGUGCGAGGCCc -3'
miRNA:   3'- -CACGU-UGAGg-GCGgGCGCGCUCUGGc -5'
6677 5' -61.1 NC_001847.1 + 82735 0.66 0.654059
Target:  5'- -cGaCAGCgcgCgCCGCCCGCGCugGAGcgcuuGCCGg -3'
miRNA:   3'- caC-GUUGa--G-GGCGGGCGCG--CUC-----UGGC- -5'
6677 5' -61.1 NC_001847.1 + 47338 0.66 0.643126
Target:  5'- -aGCggUUUUgGCCCGCGUcgaagacgcggaaGAGGCCGc -3'
miRNA:   3'- caCGuuGAGGgCGGGCGCG-------------CUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 105354 0.66 0.644121
Target:  5'- -gGCGgcGCUCCCG-CCGC-CG-GGCCGg -3'
miRNA:   3'- caCGU--UGAGGGCgGGCGcGCuCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.