miRNA display CGI


Results 1 - 20 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6677 5' -61.1 NC_001847.1 + 73780 0.73 0.302196
Target:  5'- -cGCGACgCCuCGCCgGUGCGGGGCUGc -3'
miRNA:   3'- caCGUUGaGG-GCGGgCGCGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 105156 0.74 0.251595
Target:  5'- -gGCGGCUCCCG-CCGCGCcGGcCCGg -3'
miRNA:   3'- caCGUUGAGGGCgGGCGCGcUCuGGC- -5'
6677 5' -61.1 NC_001847.1 + 74622 0.74 0.257518
Target:  5'- cGUGCAGCUgggCagCGCCuCGCGCGAGGCgGg -3'
miRNA:   3'- -CACGUUGA---Gg-GCGG-GCGCGCUCUGgC- -5'
6677 5' -61.1 NC_001847.1 + 103691 0.74 0.257518
Target:  5'- -cGCGGCggCgGCCCGCGCcGGGGCCGc -3'
miRNA:   3'- caCGUUGagGgCGGGCGCG-CUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 55662 0.73 0.282352
Target:  5'- cGUGCGcgccgcGCUCCgGCUCGCGCaGGcGGCCGg -3'
miRNA:   3'- -CACGU------UGAGGgCGGGCGCG-CU-CUGGC- -5'
6677 5' -61.1 NC_001847.1 + 11182 0.73 0.282352
Target:  5'- cUGgGGCUgCCGCugguCCGCGCGGGGCUGg -3'
miRNA:   3'- cACgUUGAgGGCG----GGCGCGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 77563 0.73 0.282352
Target:  5'- cGUGCGcUUUCCGCggCCGCGCG-GGCCGa -3'
miRNA:   3'- -CACGUuGAGGGCG--GGCGCGCuCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 50674 0.73 0.28885
Target:  5'- -gGCGACgugCCCugcgggcuguGCUCGCGCGAcGACCGg -3'
miRNA:   3'- caCGUUGa--GGG----------CGGGCGCGCU-CUGGC- -5'
6677 5' -61.1 NC_001847.1 + 61944 0.73 0.295464
Target:  5'- -aGCGGCggCgCgGCCCGCGCG-GGCCGa -3'
miRNA:   3'- caCGUUGa-G-GgCGGGCGCGCuCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 113396 0.74 0.245785
Target:  5'- -gGCGGC-CCC-CCCGCGCGcgcGGGCCGg -3'
miRNA:   3'- caCGUUGaGGGcGGGCGCGC---UCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 90551 0.74 0.234499
Target:  5'- -gGCGGCcCUCGCCgCGCGCGAGGgCGa -3'
miRNA:   3'- caCGUUGaGGGCGG-GCGCGCUCUgGC- -5'
6677 5' -61.1 NC_001847.1 + 19229 0.74 0.234499
Target:  5'- cUGCGACagCCagCGCCUGCGCGAG-CCGg -3'
miRNA:   3'- cACGUUGa-GG--GCGGGCGCGCUCuGGC- -5'
6677 5' -61.1 NC_001847.1 + 112964 0.79 0.117779
Target:  5'- cUGCAGCUCUCGCCCGaGC-AGGCCGg -3'
miRNA:   3'- cACGUUGAGGGCGGGCgCGcUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 46751 0.78 0.140523
Target:  5'- -cGaCGGCgcgCCCGCCCgccGCGCGGGGCCGg -3'
miRNA:   3'- caC-GUUGa--GGGCGGG---CGCGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 129312 0.76 0.175654
Target:  5'- gGUGCAagGCgggCCUGCCgGgCGCGGGGCCGg -3'
miRNA:   3'- -CACGU--UGa--GGGCGGgC-GCGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 89903 0.76 0.180008
Target:  5'- -cGCGGCgCCCGagguugugCCGCGCGAGGCCGc -3'
miRNA:   3'- caCGUUGaGGGCg-------GGCGCGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 91694 0.75 0.211708
Target:  5'- cUGCGGCUCCCGCuucgcucucgggcaCCGCGCGAcgcgaGGCCc -3'
miRNA:   3'- cACGUUGAGGGCG--------------GGCGCGCU-----CUGGc -5'
6677 5' -61.1 NC_001847.1 + 83932 0.75 0.223121
Target:  5'- -aGCAGggCCCGCUcgaagugCGCGCGGGGCCGg -3'
miRNA:   3'- caCGUUgaGGGCGG-------GCGCGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 132821 0.75 0.223652
Target:  5'- -cGCcGCUgCCCGCCCGCGUgcuGGGGCCc -3'
miRNA:   3'- caCGuUGA-GGGCGGGCGCG---CUCUGGc -5'
6677 5' -61.1 NC_001847.1 + 85970 0.74 0.234499
Target:  5'- uUGCAGCggaCGCCCgGCGCGuGACCGu -3'
miRNA:   3'- cACGUUGaggGCGGG-CGCGCuCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.