miRNA display CGI


Results 1 - 20 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6677 5' -61.1 NC_001847.1 + 122 0.67 0.624224
Target:  5'- -cGCGccccgGC-CCCGCCCGCGgGccucGGGCCc -3'
miRNA:   3'- caCGU-----UGaGGGCGGGCGCgC----UCUGGc -5'
6677 5' -61.1 NC_001847.1 + 280 0.68 0.555118
Target:  5'- -gGgGGCcgCCgaGCCCGCGCGGGcGCCGu -3'
miRNA:   3'- caCgUUGa-GGg-CGGGCGCGCUC-UGGC- -5'
6677 5' -61.1 NC_001847.1 + 363 0.66 0.654059
Target:  5'- -cGCccCggggCCCGcCCCGCGCGccgcgcgccGGACCGc -3'
miRNA:   3'- caCGuuGa---GGGC-GGGCGCGC---------UCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 633 0.68 0.555118
Target:  5'- -cGCGcCUCCC-CCCGCcccCGAGGCCc -3'
miRNA:   3'- caCGUuGAGGGcGGGCGc--GCUCUGGc -5'
6677 5' -61.1 NC_001847.1 + 878 0.74 0.257518
Target:  5'- -cGCGGCggCgGCCCGCGCcGGGGCCGc -3'
miRNA:   3'- caCGUUGagGgCGGGCGCG-CUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 915 0.66 0.654059
Target:  5'- -gGCcGCcgCCCGCCgGCGcCGGGAagcCCGa -3'
miRNA:   3'- caCGuUGa-GGGCGGgCGC-GCUCU---GGC- -5'
6677 5' -61.1 NC_001847.1 + 1156 0.68 0.563909
Target:  5'- -cGCGGCUCCgGCagcgcggCCGCGCaGaAGGCCa -3'
miRNA:   3'- caCGUUGAGGgCG-------GGCGCG-C-UCUGGc -5'
6677 5' -61.1 NC_001847.1 + 1913 0.71 0.392118
Target:  5'- cGUGCGAgagCCCGCCgCgGCGCGGcGGCCa -3'
miRNA:   3'- -CACGUUga-GGGCGG-G-CGCGCU-CUGGc -5'
6677 5' -61.1 NC_001847.1 + 2079 0.7 0.443157
Target:  5'- -gGCGGCgagcgCCCcgcgggGCCCGCGCGgcggcGGGCCGc -3'
miRNA:   3'- caCGUUGa----GGG------CGGGCGCGC-----UCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 2173 0.67 0.594439
Target:  5'- -cGCAGCgCCCGCgCCGCcuggGCGGcGugCGg -3'
miRNA:   3'- caCGUUGaGGGCG-GGCG----CGCU-CugGC- -5'
6677 5' -61.1 NC_001847.1 + 2343 0.74 0.251595
Target:  5'- -gGCGGCUCCCG-CCGCGCcGGcCCGg -3'
miRNA:   3'- caCGUUGAGGGCgGGCGCGcUCuGGC- -5'
6677 5' -61.1 NC_001847.1 + 2541 0.66 0.644121
Target:  5'- -gGCGgcGCUCCCG-CCGC-CG-GGCCGg -3'
miRNA:   3'- caCGU--UGAGGGCgGGCGcGCuCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 2602 0.69 0.469132
Target:  5'- -cGCAcGCgagCCCGCCgCGCcggaggugcuucgGCGGGACCGc -3'
miRNA:   3'- caCGU-UGa--GGGCGG-GCG-------------CGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 2948 0.68 0.534772
Target:  5'- -cGC-ACUCCgGCgCCGUGUucgcacuGAGACCGg -3'
miRNA:   3'- caCGuUGAGGgCG-GGCGCG-------CUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 2957 0.67 0.604351
Target:  5'- -cGCGGCggCCGCCUcgGCGCGcagcgccgccgGGGCCGg -3'
miRNA:   3'- caCGUUGagGGCGGG--CGCGC-----------UCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 3878 0.66 0.654059
Target:  5'- -gGCGGCggCCCG-UCGCGCGGcGCCGc -3'
miRNA:   3'- caCGUUGa-GGGCgGGCGCGCUcUGGC- -5'
6677 5' -61.1 NC_001847.1 + 3881 0.66 0.634173
Target:  5'- -cGCAGCUCCCagcggagcgaGCCguugCGCGCGGuGGCgCGg -3'
miRNA:   3'- caCGUUGAGGG----------CGG----GCGCGCU-CUG-GC- -5'
6677 5' -61.1 NC_001847.1 + 4018 0.68 0.535735
Target:  5'- -gGCccGGCgCCCGCCUcuCGCGGGGCCGc -3'
miRNA:   3'- caCG--UUGaGGGCGGGc-GCGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 4539 0.71 0.375974
Target:  5'- -cGCGGCggCCGCCCGCGgGuGGCgCGg -3'
miRNA:   3'- caCGUUGagGGCGGGCGCgCuCUG-GC- -5'
6677 5' -61.1 NC_001847.1 + 5000 0.68 0.555118
Target:  5'- -cGCAGCUguauugcgcCUCGCCCucgcGCGCGAGGgCGc -3'
miRNA:   3'- caCGUUGA---------GGGCGGG----CGCGCUCUgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.