miRNA display CGI


Results 21 - 40 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6677 5' -61.1 NC_001847.1 + 5834 0.68 0.564888
Target:  5'- cGUGCAGCaCCCaCCCGaaGCGAG-CCGc -3'
miRNA:   3'- -CACGUUGaGGGcGGGCg-CGCUCuGGC- -5'
6677 5' -61.1 NC_001847.1 + 6333 0.66 0.644121
Target:  5'- uGUGCGcgccuGCgcgCCCGCCCGCcCGcccuggucuGACCGc -3'
miRNA:   3'- -CACGU-----UGa--GGGCGGGCGcGCu--------CUGGC- -5'
6677 5' -61.1 NC_001847.1 + 6537 0.66 0.673879
Target:  5'- -gGCcACagCCGCCgGUGCGAGGgCGc -3'
miRNA:   3'- caCGuUGagGGCGGgCGCGCUCUgGC- -5'
6677 5' -61.1 NC_001847.1 + 6685 0.67 0.604351
Target:  5'- -cGCGGCggCCgGCCgggCGCGCGcgcaGGGCCGa -3'
miRNA:   3'- caCGUUGa-GGgCGG---GCGCGC----UCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 6971 0.69 0.488418
Target:  5'- -gGCGgcGCUUCCGCCCGCGgGccGCCc -3'
miRNA:   3'- caCGU--UGAGGGCGGGCGCgCucUGGc -5'
6677 5' -61.1 NC_001847.1 + 7075 0.68 0.526132
Target:  5'- -cGCGGCgagCCGCCCGgGCcaguuguagGAGACCa -3'
miRNA:   3'- caCGUUGag-GGCGGGCgCG---------CUCUGGc -5'
6677 5' -61.1 NC_001847.1 + 9665 0.7 0.417162
Target:  5'- -gGCGucCUCgCGCCCGcCGCGAGcuGCCGc -3'
miRNA:   3'- caCGUu-GAGgGCGGGC-GCGCUC--UGGC- -5'
6677 5' -61.1 NC_001847.1 + 9827 0.66 0.661007
Target:  5'- -cGCGGCUCCgaaaacgcccaaggCGCCCugGUGUG-GACCGa -3'
miRNA:   3'- caCGUUGAGG--------------GCGGG--CGCGCuCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 10080 0.7 0.425724
Target:  5'- -aGC-GC-CCCGCCgCGCGCGGGAgCa -3'
miRNA:   3'- caCGuUGaGGGCGG-GCGCGCUCUgGc -5'
6677 5' -61.1 NC_001847.1 + 10151 0.79 0.117779
Target:  5'- cUGCAGCUCUCGCCCGaGC-AGGCCGg -3'
miRNA:   3'- cACGUUGAGGGCGGGCgCGcUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 10373 0.69 0.460986
Target:  5'- cUGCucgGgUCgCCGCUCGCgGCGGGGCCGc -3'
miRNA:   3'- cACGu--UgAG-GGCGGGCG-CGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 10583 0.74 0.245785
Target:  5'- -gGCGGC-CCC-CCCGCGCGcgcGGGCCGg -3'
miRNA:   3'- caCGUUGaGGGcGGGCGCGC---UCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 10829 0.66 0.683744
Target:  5'- cUGCAGCaCCUGCgcgcgacggCgGCGCGuGGCCGa -3'
miRNA:   3'- cACGUUGaGGGCG---------GgCGCGCuCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 11182 0.73 0.282352
Target:  5'- cUGgGGCUgCCGCugguCCGCGCGGGGCUGg -3'
miRNA:   3'- cACgUUGAgGGCG----GGCGCGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 11301 0.69 0.460986
Target:  5'- -cGCGAagaugggCgCGCCCGC-CGAGGCCGg -3'
miRNA:   3'- caCGUUga-----GgGCGGGCGcGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 11347 0.67 0.62323
Target:  5'- cUGCcGCUgCCGCcgCCGCGCaggccccGAGGCCa -3'
miRNA:   3'- cACGuUGAgGGCG--GGCGCG-------CUCUGGc -5'
6677 5' -61.1 NC_001847.1 + 11444 0.66 0.673879
Target:  5'- cGUGCGAC-CCCGCgCCagcggcuaccguGCGCGuGGCg- -3'
miRNA:   3'- -CACGUUGaGGGCG-GG------------CGCGCuCUGgc -5'
6677 5' -61.1 NC_001847.1 + 11571 0.67 0.601375
Target:  5'- gGUGCGGCUgCCGCggugccgguugcuuCUGCGCu-GGCCGg -3'
miRNA:   3'- -CACGUUGAgGGCG--------------GGCGCGcuCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 13532 0.67 0.624224
Target:  5'- -aGCGGCUgCCGCUaggcaGCGCGAcGCUGc -3'
miRNA:   3'- caCGUUGAgGGCGGg----CGCGCUcUGGC- -5'
6677 5' -61.1 NC_001847.1 + 13672 0.67 0.604351
Target:  5'- gGUGUGGaaCCaCGagCCGCGCGAGACCc -3'
miRNA:   3'- -CACGUUgaGG-GCg-GGCGCGCUCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.