miRNA display CGI


Results 21 - 40 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6677 5' -61.1 NC_001847.1 + 113396 0.74 0.245785
Target:  5'- -gGCGGC-CCC-CCCGCGCGcgcGGGCCGg -3'
miRNA:   3'- caCGUUGaGGGcGGGCGCGC---UCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 58038 0.74 0.245785
Target:  5'- -aGCAGC-CCCGCcgcuaCCGCGCGcGGGCCGc -3'
miRNA:   3'- caCGUUGaGGGCG-----GGCGCGC-UCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 10583 0.74 0.245785
Target:  5'- -gGCGGC-CCC-CCCGCGCGcgcGGGCCGg -3'
miRNA:   3'- caCGUUGaGGGcGGGCGCGC---UCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 2343 0.74 0.251595
Target:  5'- -gGCGGCUCCCG-CCGCGCcGGcCCGg -3'
miRNA:   3'- caCGUUGAGGGCgGGCGCGcUCuGGC- -5'
6677 5' -61.1 NC_001847.1 + 40905 0.74 0.251595
Target:  5'- -aGCcGCUCCacgGCCCGCGCGGGcGCCc -3'
miRNA:   3'- caCGuUGAGGg--CGGGCGCGCUC-UGGc -5'
6677 5' -61.1 NC_001847.1 + 105156 0.74 0.251595
Target:  5'- -gGCGGCUCCCG-CCGCGCcGGcCCGg -3'
miRNA:   3'- caCGUUGAGGGCgGGCGCGcUCuGGC- -5'
6677 5' -61.1 NC_001847.1 + 103691 0.74 0.257518
Target:  5'- -cGCGGCggCgGCCCGCGCcGGGGCCGc -3'
miRNA:   3'- caCGUUGagGgCGGGCGCG-CUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 878 0.74 0.257518
Target:  5'- -cGCGGCggCgGCCCGCGCcGGGGCCGc -3'
miRNA:   3'- caCGUUGagGgCGGGCGCG-CUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 74622 0.74 0.257518
Target:  5'- cGUGCAGCUgggCagCGCCuCGCGCGAGGCgGg -3'
miRNA:   3'- -CACGUUGA---Gg-GCGG-GCGCGCUCUGgC- -5'
6677 5' -61.1 NC_001847.1 + 30919 0.74 0.257518
Target:  5'- -cGCAccGCggugCCCGugcCCCGCGCGAGuACCGg -3'
miRNA:   3'- caCGU--UGa---GGGC---GGGCGCGCUC-UGGC- -5'
6677 5' -61.1 NC_001847.1 + 93332 0.73 0.269704
Target:  5'- -cGCGcCgCCCGCCCGCGCG-GugCGu -3'
miRNA:   3'- caCGUuGaGGGCGGGCGCGCuCugGC- -5'
6677 5' -61.1 NC_001847.1 + 73187 0.73 0.27597
Target:  5'- -gGCGGCggagUCgGCCCGCGCG-GGCCGc -3'
miRNA:   3'- caCGUUGa---GGgCGGGCGCGCuCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 112762 0.73 0.27597
Target:  5'- -cGCGAC-CCCgGCCCGCG-GGGGCCu -3'
miRNA:   3'- caCGUUGaGGG-CGGGCGCgCUCUGGc -5'
6677 5' -61.1 NC_001847.1 + 55662 0.73 0.282352
Target:  5'- cGUGCGcgccgcGCUCCgGCUCGCGCaGGcGGCCGg -3'
miRNA:   3'- -CACGU------UGAGGgCGGGCGCG-CU-CUGGC- -5'
6677 5' -61.1 NC_001847.1 + 129425 0.73 0.282352
Target:  5'- aUGCGACgCCCGCCUGCuGCGGGGuguCCa -3'
miRNA:   3'- cACGUUGaGGGCGGGCG-CGCUCU---GGc -5'
6677 5' -61.1 NC_001847.1 + 38202 0.73 0.282352
Target:  5'- -aGCGcCUgCCGCCCGCG-GAGGCCc -3'
miRNA:   3'- caCGUuGAgGGCGGGCGCgCUCUGGc -5'
6677 5' -61.1 NC_001847.1 + 77563 0.73 0.282352
Target:  5'- cGUGCGcUUUCCGCggCCGCGCG-GGCCGa -3'
miRNA:   3'- -CACGUuGAGGGCG--GGCGCGCuCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 11182 0.73 0.282352
Target:  5'- cUGgGGCUgCCGCugguCCGCGCGGGGCUGg -3'
miRNA:   3'- cACgUUGAgGGCG----GGCGCGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 50674 0.73 0.28885
Target:  5'- -gGCGACgugCCCugcgggcuguGCUCGCGCGAcGACCGg -3'
miRNA:   3'- caCGUUGa--GGG----------CGGGCGCGCU-CUGGC- -5'
6677 5' -61.1 NC_001847.1 + 61944 0.73 0.295464
Target:  5'- -aGCGGCggCgCgGCCCGCGCG-GGCCGa -3'
miRNA:   3'- caCGUUGa-G-GgCGGGCGCGCuCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.