miRNA display CGI


Results 21 - 40 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6677 5' -61.1 NC_001847.1 + 125406 0.66 0.673879
Target:  5'- -gGCAGggCCCGCCCGguCGCGuGGCa- -3'
miRNA:   3'- caCGUUgaGGGCGGGC--GCGCuCUGgc -5'
6677 5' -61.1 NC_001847.1 + 76919 0.66 0.673879
Target:  5'- -cGCcGCUgCCGCCCG-GCGGGcagauCCGc -3'
miRNA:   3'- caCGuUGAgGGCGGGCgCGCUCu----GGC- -5'
6677 5' -61.1 NC_001847.1 + 22593 0.66 0.673879
Target:  5'- -gGCAGggCCCGCCCGguCGCGuGGCa- -3'
miRNA:   3'- caCGUUgaGGGCGGGC--GCGCuCUGgc -5'
6677 5' -61.1 NC_001847.1 + 134168 0.66 0.673879
Target:  5'- -gGCGGCggaagcCCCGCCgGCcCGGGuGCCGg -3'
miRNA:   3'- caCGUUGa-----GGGCGGgCGcGCUC-UGGC- -5'
6677 5' -61.1 NC_001847.1 + 31355 0.66 0.673879
Target:  5'- -gGCGGCggaagcCCCGCCgGCcCGGGuGCCGg -3'
miRNA:   3'- caCGUUGa-----GGGCGGgCGcGCUC-UGGC- -5'
6677 5' -61.1 NC_001847.1 + 110657 0.66 0.672891
Target:  5'- uGUGCAACUuggccagcgucaaCCUGCCgcgcugcgUGCGCGAGGgUGa -3'
miRNA:   3'- -CACGUUGA-------------GGGCGG--------GCGCGCUCUgGC- -5'
6677 5' -61.1 NC_001847.1 + 71357 0.66 0.663981
Target:  5'- -aGCGACcagaaagCCCGCguCCGCGCGgucuccGGGCCu -3'
miRNA:   3'- caCGUUGa------GGGCG--GGCGCGC------UCUGGc -5'
6677 5' -61.1 NC_001847.1 + 122134 0.66 0.663981
Target:  5'- -cGCGACggCCgGCgcgcagggcgCCGCGCGGGACg- -3'
miRNA:   3'- caCGUUGa-GGgCG----------GGCGCGCUCUGgc -5'
6677 5' -61.1 NC_001847.1 + 19288 0.66 0.663981
Target:  5'- uGUGCGGCgggCCGCCaacaaacgaGCGCGGccgcGGCCGu -3'
miRNA:   3'- -CACGUUGag-GGCGGg--------CGCGCU----CUGGC- -5'
6677 5' -61.1 NC_001847.1 + 43281 0.66 0.663981
Target:  5'- cUGCGACgCCgCGCgUGCGCG-GGCUGc -3'
miRNA:   3'- cACGUUGaGG-GCGgGCGCGCuCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 85307 0.66 0.663981
Target:  5'- -aGCAGCacggCCGCCUGCaGCGuccAGGCCGc -3'
miRNA:   3'- caCGUUGag--GGCGGGCG-CGC---UCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 21009 0.66 0.663981
Target:  5'- gGUGCgAACUCaCGCCgaGCGCGcGugCGa -3'
miRNA:   3'- -CACG-UUGAGgGCGGg-CGCGCuCugGC- -5'
6677 5' -61.1 NC_001847.1 + 117510 0.66 0.663981
Target:  5'- -gGCAGgUUCCGCUccaCGCGCggcgacgacGAGGCCGu -3'
miRNA:   3'- caCGUUgAGGGCGG---GCGCG---------CUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 35975 0.66 0.663981
Target:  5'- cUGUGGCUCCCGCCgGCugGCGccacaAGGCgCGc -3'
miRNA:   3'- cACGUUGAGGGCGGgCG--CGC-----UCUG-GC- -5'
6677 5' -61.1 NC_001847.1 + 99028 0.66 0.663981
Target:  5'- -cGCGGCUUCguggaaggCGCCCaGCGCGucGCCGc -3'
miRNA:   3'- caCGUUGAGG--------GCGGG-CGCGCucUGGC- -5'
6677 5' -61.1 NC_001847.1 + 101039 0.66 0.663981
Target:  5'- -cGCAGgcUCCGCcgCCGCGCGAG-CCa -3'
miRNA:   3'- caCGUUgaGGGCG--GGCGCGCUCuGGc -5'
6677 5' -61.1 NC_001847.1 + 104217 0.66 0.663981
Target:  5'- aUGCGAaggcCUCCCGCCgcaccgccggCGCGCGccucACCGg -3'
miRNA:   3'- cACGUU----GAGGGCGG----------GCGCGCuc--UGGC- -5'
6677 5' -61.1 NC_001847.1 + 9827 0.66 0.661007
Target:  5'- -cGCGGCUCCgaaaacgcccaaggCGCCCugGUGUG-GACCGa -3'
miRNA:   3'- caCGUUGAGG--------------GCGGG--CGCGCuCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 42035 0.66 0.661007
Target:  5'- -cGCGGCgccuuuauagCCCGCCCcgcuuugcgggcgcGCGCGgGGGCCu -3'
miRNA:   3'- caCGUUGa---------GGGCGGG--------------CGCGC-UCUGGc -5'
6677 5' -61.1 NC_001847.1 + 103728 0.66 0.654059
Target:  5'- -gGCcGCcgCCCGCCgGCGcCGGGAagcCCGa -3'
miRNA:   3'- caCGuUGa-GGGCGGgCGC-GCUCU---GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.