miRNA display CGI


Results 1 - 20 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6677 5' -61.1 NC_001847.1 + 53199 0.65 0.689645
Target:  5'- -cGCGGuguuaacgaauaugUUgCCGCCCuugauguccagguGCGCGAGGCCGc -3'
miRNA:   3'- caCGUU--------------GAgGGCGGG-------------CGCGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 87059 0.66 0.683744
Target:  5'- cUGCAGCUUCCGCgCgGCGUGc-GCCc -3'
miRNA:   3'- cACGUUGAGGGCG-GgCGCGCucUGGc -5'
6677 5' -61.1 NC_001847.1 + 53909 0.66 0.683744
Target:  5'- -cGCGACggcCCCGCCCGgagGCGAcGGCg- -3'
miRNA:   3'- caCGUUGa--GGGCGGGCg--CGCU-CUGgc -5'
6677 5' -61.1 NC_001847.1 + 10829 0.66 0.683744
Target:  5'- cUGCAGCaCCUGCgcgcgacggCgGCGCGuGGCCGa -3'
miRNA:   3'- cACGUUGaGGGCG---------GgCGCGCuCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 37320 0.66 0.683744
Target:  5'- cGUGUGGCggcacgcgCCCgacgcgGCCaCGCGCGcGACCGu -3'
miRNA:   3'- -CACGUUGa-------GGG------CGG-GCGCGCuCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 56879 0.66 0.683744
Target:  5'- -cGCGGCcacgggCCCGCCgGCgacgGCGAcGCCGg -3'
miRNA:   3'- caCGUUGa-----GGGCGGgCG----CGCUcUGGC- -5'
6677 5' -61.1 NC_001847.1 + 63843 0.66 0.683744
Target:  5'- cGUGCGcuUUCCUGCgCGCGgGGGGCg- -3'
miRNA:   3'- -CACGUu-GAGGGCGgGCGCgCUCUGgc -5'
6677 5' -61.1 NC_001847.1 + 98461 0.66 0.683744
Target:  5'- -cGCcGCUCUCGUCCaGCGgGGGGCg- -3'
miRNA:   3'- caCGuUGAGGGCGGG-CGCgCUCUGgc -5'
6677 5' -61.1 NC_001847.1 + 29899 0.66 0.683744
Target:  5'- -gGCGGC-CCUGCCggccgcCGCGgGGGGCCc -3'
miRNA:   3'- caCGUUGaGGGCGG------GCGCgCUCUGGc -5'
6677 5' -61.1 NC_001847.1 + 70973 0.66 0.683744
Target:  5'- -cGCcGC-CCCGUCCGCGCaagcGGCCu -3'
miRNA:   3'- caCGuUGaGGGCGGGCGCGcu--CUGGc -5'
6677 5' -61.1 NC_001847.1 + 71886 0.66 0.68276
Target:  5'- -cGCGGCccguuguugucuuUCCCaGCCCGUGCGc-GCCGu -3'
miRNA:   3'- caCGUUG-------------AGGG-CGGGCGCGCucUGGC- -5'
6677 5' -61.1 NC_001847.1 + 88526 0.66 0.673879
Target:  5'- uGUGCuuCaCCaCGCUCGUgcgccGCGAGGCCGc -3'
miRNA:   3'- -CACGuuGaGG-GCGGGCG-----CGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 99305 0.66 0.673879
Target:  5'- aUGCAcgcccaUCgCCGCCCGC-CGgGGGCCGa -3'
miRNA:   3'- cACGUug----AG-GGCGGGCGcGC-UCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 125406 0.66 0.673879
Target:  5'- -gGCAGggCCCGCCCGguCGCGuGGCa- -3'
miRNA:   3'- caCGUUgaGGGCGGGC--GCGCuCUGgc -5'
6677 5' -61.1 NC_001847.1 + 109350 0.66 0.673879
Target:  5'- -gGCcACagCCGCCgGUGCGAGGgCGc -3'
miRNA:   3'- caCGuUGagGGCGGgCGCGCUCUgGC- -5'
6677 5' -61.1 NC_001847.1 + 79689 0.66 0.673879
Target:  5'- -cGCGGCgcgcgcCCCGCCgGCGCcAGGCg- -3'
miRNA:   3'- caCGUUGa-----GGGCGGgCGCGcUCUGgc -5'
6677 5' -61.1 NC_001847.1 + 11444 0.66 0.673879
Target:  5'- cGUGCGAC-CCCGCgCCagcggcuaccguGCGCGuGGCg- -3'
miRNA:   3'- -CACGUUGaGGGCG-GG------------CGCGCuCUGgc -5'
6677 5' -61.1 NC_001847.1 + 134168 0.66 0.673879
Target:  5'- -gGCGGCggaagcCCCGCCgGCcCGGGuGCCGg -3'
miRNA:   3'- caCGUUGa-----GGGCGGgCGcGCUC-UGGC- -5'
6677 5' -61.1 NC_001847.1 + 34795 0.66 0.673879
Target:  5'- -cGCGGCUacgacccgcggCCGCUgGCGCGgcAGGCCGa -3'
miRNA:   3'- caCGUUGAg----------GGCGGgCGCGC--UCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 76919 0.66 0.673879
Target:  5'- -cGCcGCUgCCGCCCG-GCGGGcagauCCGc -3'
miRNA:   3'- caCGuUGAgGGCGGGCgCGCUCu----GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.