miRNA display CGI


Results 41 - 60 of 361 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6677 5' -61.1 NC_001847.1 + 363 0.66 0.654059
Target:  5'- -cGCccCggggCCCGcCCCGCGCGccgcgcgccGGACCGc -3'
miRNA:   3'- caCGuuGa---GGGC-GGGCGCGC---------UCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 129933 0.66 0.654059
Target:  5'- -cGCAGCUUCCGUCgCGgCGCGcuuGCCGc -3'
miRNA:   3'- caCGUUGAGGGCGG-GC-GCGCuc-UGGC- -5'
6677 5' -61.1 NC_001847.1 + 3878 0.66 0.654059
Target:  5'- -gGCGGCggCCCG-UCGCGCGGcGCCGc -3'
miRNA:   3'- caCGUUGa-GGGCgGGCGCGCUcUGGC- -5'
6677 5' -61.1 NC_001847.1 + 44789 0.66 0.654059
Target:  5'- -aGCAGgUCgCCGCCCgaaagcgccgaGCGCGGcACCGc -3'
miRNA:   3'- caCGUUgAG-GGCGGG-----------CGCGCUcUGGC- -5'
6677 5' -61.1 NC_001847.1 + 59799 0.66 0.654059
Target:  5'- -cGCGcuuuuaccACUgCCGCCCGCcCGGGAgCGc -3'
miRNA:   3'- caCGU--------UGAgGGCGGGCGcGCUCUgGC- -5'
6677 5' -61.1 NC_001847.1 + 130938 0.66 0.654059
Target:  5'- -cGCAggGCUUuggCUGCCUGCGCGcGGCCc -3'
miRNA:   3'- caCGU--UGAG---GGCGGGCGCGCuCUGGc -5'
6677 5' -61.1 NC_001847.1 + 82735 0.66 0.654059
Target:  5'- -cGaCAGCgcgCgCCGCCCGCGCugGAGcgcuuGCCGg -3'
miRNA:   3'- caC-GUUGa--G-GGCGGGCGCG--CUC-----UGGC- -5'
6677 5' -61.1 NC_001847.1 + 98199 0.66 0.654059
Target:  5'- -cGCAGCcCCCGCUCGgccaGCGAGAa-- -3'
miRNA:   3'- caCGUUGaGGGCGGGCg---CGCUCUggc -5'
6677 5' -61.1 NC_001847.1 + 77199 0.66 0.654059
Target:  5'- -cGC-GCUgCUGCCCGCGaCGGaGCCGc -3'
miRNA:   3'- caCGuUGAgGGCGGGCGC-GCUcUGGC- -5'
6677 5' -61.1 NC_001847.1 + 58061 0.66 0.654059
Target:  5'- -cGCAGCUCgCGCUUcgGCGgCGAGcGCCGc -3'
miRNA:   3'- caCGUUGAGgGCGGG--CGC-GCUC-UGGC- -5'
6677 5' -61.1 NC_001847.1 + 103728 0.66 0.654059
Target:  5'- -gGCcGCcgCCCGCCgGCGcCGGGAagcCCGa -3'
miRNA:   3'- caCGuUGa-GGGCGGgCGC-GCUCU---GGC- -5'
6677 5' -61.1 NC_001847.1 + 103176 0.66 0.654059
Target:  5'- -cGCccCggggCCCGcCCCGCGCGccgcgcgccGGACCGc -3'
miRNA:   3'- caCGuuGa---GGGC-GGGCGCGC---------UCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 106691 0.66 0.654059
Target:  5'- -gGCGGCggCCCG-UCGCGCGGcGCCGc -3'
miRNA:   3'- caCGUUGa-GGGCgGGCGCGCUcUGGC- -5'
6677 5' -61.1 NC_001847.1 + 70211 0.66 0.653066
Target:  5'- -aGCGGCcacccgcCCCGCCggcguuggugugaCGCGCGGGGCgGg -3'
miRNA:   3'- caCGUUGa------GGGCGG-------------GCGCGCUCUGgC- -5'
6677 5' -61.1 NC_001847.1 + 64891 0.66 0.645115
Target:  5'- -aGCAACgccgcgcgcccgccgCCCGcCCCGCGCGucacACCa -3'
miRNA:   3'- caCGUUGa--------------GGGC-GGGCGCGCuc--UGGc -5'
6677 5' -61.1 NC_001847.1 + 60137 0.66 0.644121
Target:  5'- -cGCuGGCccCCCGCCCGCcgGCG-GACUGa -3'
miRNA:   3'- caCG-UUGa-GGGCGGGCG--CGCuCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 129471 0.66 0.644121
Target:  5'- -gGCGGC-CgCCGCCgCGCGCGAcGGCg- -3'
miRNA:   3'- caCGUUGaG-GGCGG-GCGCGCU-CUGgc -5'
6677 5' -61.1 NC_001847.1 + 105354 0.66 0.644121
Target:  5'- -gGCGgcGCUCCCG-CCGC-CG-GGCCGg -3'
miRNA:   3'- caCGU--UGAGGGCgGGCGcGCuCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 109146 0.66 0.644121
Target:  5'- uGUGCGcgccuGCgcgCCCGCCCGCcCGcccuggucuGACCGc -3'
miRNA:   3'- -CACGU-----UGa--GGGCGGGCGcGCu--------CUGGC- -5'
6677 5' -61.1 NC_001847.1 + 58393 0.66 0.644121
Target:  5'- cGUGCcc--CCCGCCCGaGCGcccGACCGu -3'
miRNA:   3'- -CACGuugaGGGCGGGCgCGCu--CUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.