miRNA display CGI


Results 41 - 60 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6677 5' -61.1 NC_001847.1 + 90551 0.74 0.234499
Target:  5'- -gGCGGCcCUCGCCgCGCGCGAGGgCGa -3'
miRNA:   3'- caCGUUGaGGGCGG-GCGCGCUCUgGC- -5'
6677 5' -61.1 NC_001847.1 + 113396 0.74 0.245785
Target:  5'- -gGCGGC-CCC-CCCGCGCGcgcGGGCCGg -3'
miRNA:   3'- caCGUUGaGGGcGGGCGCGC---UCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 105156 0.74 0.251595
Target:  5'- -gGCGGCUCCCG-CCGCGCcGGcCCGg -3'
miRNA:   3'- caCGUUGAGGGCgGGCGCGcUCuGGC- -5'
6677 5' -61.1 NC_001847.1 + 74622 0.74 0.257518
Target:  5'- cGUGCAGCUgggCagCGCCuCGCGCGAGGCgGg -3'
miRNA:   3'- -CACGUUGA---Gg-GCGG-GCGCGCUCUGgC- -5'
6677 5' -61.1 NC_001847.1 + 103691 0.74 0.257518
Target:  5'- -cGCGGCggCgGCCCGCGCcGGGGCCGc -3'
miRNA:   3'- caCGUUGagGgCGGGCGCG-CUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 55662 0.73 0.282352
Target:  5'- cGUGCGcgccgcGCUCCgGCUCGCGCaGGcGGCCGg -3'
miRNA:   3'- -CACGU------UGAGGgCGGGCGCG-CU-CUGGC- -5'
6677 5' -61.1 NC_001847.1 + 11182 0.73 0.282352
Target:  5'- cUGgGGCUgCCGCugguCCGCGCGGGGCUGg -3'
miRNA:   3'- cACgUUGAgGGCG----GGCGCGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 77563 0.73 0.282352
Target:  5'- cGUGCGcUUUCCGCggCCGCGCG-GGCCGa -3'
miRNA:   3'- -CACGUuGAGGGCG--GGCGCGCuCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 50674 0.73 0.28885
Target:  5'- -gGCGACgugCCCugcgggcuguGCUCGCGCGAcGACCGg -3'
miRNA:   3'- caCGUUGa--GGG----------CGGGCGCGCU-CUGGC- -5'
6677 5' -61.1 NC_001847.1 + 61944 0.73 0.295464
Target:  5'- -aGCGGCggCgCgGCCCGCGCG-GGCCGa -3'
miRNA:   3'- caCGUUGa-G-GgCGGGCGCGCuCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 73780 0.73 0.302196
Target:  5'- -cGCGACgCCuCGCCgGUGCGGGGCUGc -3'
miRNA:   3'- caCGUUGaGG-GCGGgCGCGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 96468 0.73 0.302196
Target:  5'- cGUGCAACUCgCUgaGCuuGCGCGAGGgcuCCGu -3'
miRNA:   3'- -CACGUUGAG-GG--CGggCGCGCUCU---GGC- -5'
6677 5' -61.1 NC_001847.1 + 30714 0.72 0.316013
Target:  5'- -gGC-GCUCCuggaCGCCCGCGCGGacguGGCCGa -3'
miRNA:   3'- caCGuUGAGG----GCGGGCGCGCU----CUGGC- -5'
6677 5' -61.1 NC_001847.1 + 117342 0.72 0.316013
Target:  5'- -gGCGccCUCCCGCCCGC-UGGGGCCc -3'
miRNA:   3'- caCGUu-GAGGGCGGGCGcGCUCUGGc -5'
6677 5' -61.1 NC_001847.1 + 42166 0.72 0.323098
Target:  5'- cGUGUGGCUgcacgccgCCCGCCCGCcCGAG-CCGu -3'
miRNA:   3'- -CACGUUGA--------GGGCGGGCGcGCUCuGGC- -5'
6677 5' -61.1 NC_001847.1 + 66155 0.72 0.323098
Target:  5'- cGUGCuggacguGCUCUCggccguGCCCGCGCG-GGCCGc -3'
miRNA:   3'- -CACGu------UGAGGG------CGGGCGCGCuCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 13954 0.72 0.330301
Target:  5'- cUGCGGCUgCgGCCCGUGgGAGcCCGc -3'
miRNA:   3'- cACGUUGAgGgCGGGCGCgCUCuGGC- -5'
6677 5' -61.1 NC_001847.1 + 41398 0.72 0.330301
Target:  5'- -aGCcGCUCCCGgaCCGCGCGGucuagcagccGGCCGg -3'
miRNA:   3'- caCGuUGAGGGCg-GGCGCGCU----------CUGGC- -5'
6677 5' -61.1 NC_001847.1 + 57397 0.72 0.337622
Target:  5'- cGUGCGGCgggUCCCGCUCGCG-GAG-CUGg -3'
miRNA:   3'- -CACGUUG---AGGGCGGGCGCgCUCuGGC- -5'
6677 5' -61.1 NC_001847.1 + 120068 0.72 0.34506
Target:  5'- -aGCcccGGCUCCUGCcgagCCGCGCGGGGCgGg -3'
miRNA:   3'- caCG---UUGAGGGCG----GGCGCGCUCUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.