Results 1 - 20 of 361 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6677 | 5' | -61.1 | NC_001847.1 | + | 99028 | 0.66 | 0.663981 |
Target: 5'- -cGCGGCUUCguggaaggCGCCCaGCGCGucGCCGc -3' miRNA: 3'- caCGUUGAGG--------GCGGG-CGCGCucUGGC- -5' |
|||||||
6677 | 5' | -61.1 | NC_001847.1 | + | 53199 | 0.65 | 0.689645 |
Target: 5'- -cGCGGuguuaacgaauaugUUgCCGCCCuugauguccagguGCGCGAGGCCGc -3' miRNA: 3'- caCGUU--------------GAgGGCGGG-------------CGCGCUCUGGC- -5' |
|||||||
6677 | 5' | -61.1 | NC_001847.1 | + | 98461 | 0.66 | 0.683744 |
Target: 5'- -cGCcGCUCUCGUCCaGCGgGGGGCg- -3' miRNA: 3'- caCGuUGAGGGCGGG-CGCgCUCUGgc -5' |
|||||||
6677 | 5' | -61.1 | NC_001847.1 | + | 22593 | 0.66 | 0.673879 |
Target: 5'- -gGCAGggCCCGCCCGguCGCGuGGCa- -3' miRNA: 3'- caCGUUgaGGGCGGGC--GCGCuCUGgc -5' |
|||||||
6677 | 5' | -61.1 | NC_001847.1 | + | 6537 | 0.66 | 0.673879 |
Target: 5'- -gGCcACagCCGCCgGUGCGAGGgCGc -3' miRNA: 3'- caCGuUGagGGCGGgCGCGCUCUgGC- -5' |
|||||||
6677 | 5' | -61.1 | NC_001847.1 | + | 29899 | 0.66 | 0.683744 |
Target: 5'- -gGCGGC-CCUGCCggccgcCGCGgGGGGCCc -3' miRNA: 3'- caCGUUGaGGGCGG------GCGCgCUCUGGc -5' |
|||||||
6677 | 5' | -61.1 | NC_001847.1 | + | 79689 | 0.66 | 0.673879 |
Target: 5'- -cGCGGCgcgcgcCCCGCCgGCGCcAGGCg- -3' miRNA: 3'- caCGUUGa-----GGGCGGgCGCGcUCUGgc -5' |
|||||||
6677 | 5' | -61.1 | NC_001847.1 | + | 31355 | 0.66 | 0.673879 |
Target: 5'- -gGCGGCggaagcCCCGCCgGCcCGGGuGCCGg -3' miRNA: 3'- caCGUUGa-----GGGCGGgCGcGCUC-UGGC- -5' |
|||||||
6677 | 5' | -61.1 | NC_001847.1 | + | 101039 | 0.66 | 0.663981 |
Target: 5'- -cGCAGgcUCCGCcgCCGCGCGAG-CCa -3' miRNA: 3'- caCGUUgaGGGCG--GGCGCGCUCuGGc -5' |
|||||||
6677 | 5' | -61.1 | NC_001847.1 | + | 35975 | 0.66 | 0.663981 |
Target: 5'- cUGUGGCUCCCGCCgGCugGCGccacaAGGCgCGc -3' miRNA: 3'- cACGUUGAGGGCGGgCG--CGC-----UCUG-GC- -5' |
|||||||
6677 | 5' | -61.1 | NC_001847.1 | + | 60850 | 0.84 | 0.052743 |
Target: 5'- -aGCAGCUCCgCGCCCGC-CGAGGCCa -3' miRNA: 3'- caCGUUGAGG-GCGGGCGcGCUCUGGc -5' |
|||||||
6677 | 5' | -61.1 | NC_001847.1 | + | 71886 | 0.66 | 0.68276 |
Target: 5'- -cGCGGCccguuguugucuuUCCCaGCCCGUGCGc-GCCGu -3' miRNA: 3'- caCGUUG-------------AGGG-CGGGCGCGCucUGGC- -5' |
|||||||
6677 | 5' | -61.1 | NC_001847.1 | + | 70973 | 0.66 | 0.683744 |
Target: 5'- -cGCcGC-CCCGUCCGCGCaagcGGCCu -3' miRNA: 3'- caCGuUGaGGGCGGGCGCGcu--CUGGc -5' |
|||||||
6677 | 5' | -61.1 | NC_001847.1 | + | 110657 | 0.66 | 0.672891 |
Target: 5'- uGUGCAACUuggccagcgucaaCCUGCCgcgcugcgUGCGCGAGGgUGa -3' miRNA: 3'- -CACGUUGA-------------GGGCGG--------GCGCGCUCUgGC- -5' |
|||||||
6677 | 5' | -61.1 | NC_001847.1 | + | 104217 | 0.66 | 0.663981 |
Target: 5'- aUGCGAaggcCUCCCGCCgcaccgccggCGCGCGccucACCGg -3' miRNA: 3'- cACGUU----GAGGGCGG----------GCGCGCuc--UGGC- -5' |
|||||||
6677 | 5' | -61.1 | NC_001847.1 | + | 88526 | 0.66 | 0.673879 |
Target: 5'- uGUGCuuCaCCaCGCUCGUgcgccGCGAGGCCGc -3' miRNA: 3'- -CACGuuGaGG-GCGGGCG-----CGCUCUGGC- -5' |
|||||||
6677 | 5' | -61.1 | NC_001847.1 | + | 71357 | 0.66 | 0.663981 |
Target: 5'- -aGCGACcagaaagCCCGCguCCGCGCGgucuccGGGCCu -3' miRNA: 3'- caCGUUGa------GGGCG--GGCGCGC------UCUGGc -5' |
|||||||
6677 | 5' | -61.1 | NC_001847.1 | + | 21009 | 0.66 | 0.663981 |
Target: 5'- gGUGCgAACUCaCGCCgaGCGCGcGugCGa -3' miRNA: 3'- -CACG-UUGAGgGCGGg-CGCGCuCugGC- -5' |
|||||||
6677 | 5' | -61.1 | NC_001847.1 | + | 70788 | 0.66 | 0.673879 |
Target: 5'- -gGCGGCUCgC-UUCGCgGCGGGGCCGg -3' miRNA: 3'- caCGUUGAGgGcGGGCG-CGCUCUGGC- -5' |
|||||||
6677 | 5' | -61.1 | NC_001847.1 | + | 44971 | 0.66 | 0.673879 |
Target: 5'- -aGCAGC-CCCGCaaggCUGCGCuuGGCCa -3' miRNA: 3'- caCGUUGaGGGCG----GGCGCGcuCUGGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home