miRNA display CGI


Results 1 - 20 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6677 5' -61.1 NC_001847.1 + 53199 0.65 0.689645
Target:  5'- -cGCGGuguuaacgaauaugUUgCCGCCCuugauguccagguGCGCGAGGCCGc -3'
miRNA:   3'- caCGUU--------------GAgGGCGGG-------------CGCGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 71357 0.66 0.663981
Target:  5'- -aGCGACcagaaagCCCGCguCCGCGCGgucuccGGGCCu -3'
miRNA:   3'- caCGUUGa------GGGCG--GGCGCGC------UCUGGc -5'
6677 5' -61.1 NC_001847.1 + 21009 0.66 0.663981
Target:  5'- gGUGCgAACUCaCGCCgaGCGCGcGugCGa -3'
miRNA:   3'- -CACG-UUGAGgGCGGg-CGCGCuCugGC- -5'
6677 5' -61.1 NC_001847.1 + 60850 0.84 0.052743
Target:  5'- -aGCAGCUCCgCGCCCGC-CGAGGCCa -3'
miRNA:   3'- caCGUUGAGG-GCGGGCGcGCUCUGGc -5'
6677 5' -61.1 NC_001847.1 + 71886 0.66 0.68276
Target:  5'- -cGCGGCccguuguugucuuUCCCaGCCCGUGCGc-GCCGu -3'
miRNA:   3'- caCGUUG-------------AGGG-CGGGCGCGCucUGGC- -5'
6677 5' -61.1 NC_001847.1 + 88526 0.66 0.673879
Target:  5'- uGUGCuuCaCCaCGCUCGUgcgccGCGAGGCCGc -3'
miRNA:   3'- -CACGuuGaGG-GCGGGCG-----CGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 70788 0.66 0.673879
Target:  5'- -gGCGGCUCgC-UUCGCgGCGGGGCCGg -3'
miRNA:   3'- caCGUUGAGgGcGGGCG-CGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 31355 0.66 0.673879
Target:  5'- -gGCGGCggaagcCCCGCCgGCcCGGGuGCCGg -3'
miRNA:   3'- caCGUUGa-----GGGCGGgCGcGCUC-UGGC- -5'
6677 5' -61.1 NC_001847.1 + 44971 0.66 0.673879
Target:  5'- -aGCAGC-CCCGCaaggCUGCGCuuGGCCa -3'
miRNA:   3'- caCGUUGaGGGCG----GGCGCGcuCUGGc -5'
6677 5' -61.1 NC_001847.1 + 117510 0.66 0.663981
Target:  5'- -gGCAGgUUCCGCUccaCGCGCggcgacgacGAGGCCGu -3'
miRNA:   3'- caCGUUgAGGGCGG---GCGCG---------CUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 104217 0.66 0.663981
Target:  5'- aUGCGAaggcCUCCCGCCgcaccgccggCGCGCGccucACCGg -3'
miRNA:   3'- cACGUU----GAGGGCGG----------GCGCGCuc--UGGC- -5'
6677 5' -61.1 NC_001847.1 + 6537 0.66 0.673879
Target:  5'- -gGCcACagCCGCCgGUGCGAGGgCGc -3'
miRNA:   3'- caCGuUGagGGCGGgCGCGCUCUgGC- -5'
6677 5' -61.1 NC_001847.1 + 98461 0.66 0.683744
Target:  5'- -cGCcGCUCUCGUCCaGCGgGGGGCg- -3'
miRNA:   3'- caCGuUGAGGGCGGG-CGCgCUCUGgc -5'
6677 5' -61.1 NC_001847.1 + 101039 0.66 0.663981
Target:  5'- -cGCAGgcUCCGCcgCCGCGCGAG-CCa -3'
miRNA:   3'- caCGUUgaGGGCG--GGCGCGCUCuGGc -5'
6677 5' -61.1 NC_001847.1 + 29899 0.66 0.683744
Target:  5'- -gGCGGC-CCUGCCggccgcCGCGgGGGGCCc -3'
miRNA:   3'- caCGUUGaGGGCGG------GCGCgCUCUGGc -5'
6677 5' -61.1 NC_001847.1 + 22593 0.66 0.673879
Target:  5'- -gGCAGggCCCGCCCGguCGCGuGGCa- -3'
miRNA:   3'- caCGUUgaGGGCGGGC--GCGCuCUGgc -5'
6677 5' -61.1 NC_001847.1 + 99028 0.66 0.663981
Target:  5'- -cGCGGCUUCguggaaggCGCCCaGCGCGucGCCGc -3'
miRNA:   3'- caCGUUGAGG--------GCGGG-CGCGCucUGGC- -5'
6677 5' -61.1 NC_001847.1 + 35975 0.66 0.663981
Target:  5'- cUGUGGCUCCCGCCgGCugGCGccacaAGGCgCGc -3'
miRNA:   3'- cACGUUGAGGGCGGgCG--CGC-----UCUG-GC- -5'
6677 5' -61.1 NC_001847.1 + 70973 0.66 0.683744
Target:  5'- -cGCcGC-CCCGUCCGCGCaagcGGCCu -3'
miRNA:   3'- caCGuUGaGGGCGGGCGCGcu--CUGGc -5'
6677 5' -61.1 NC_001847.1 + 79689 0.66 0.673879
Target:  5'- -cGCGGCgcgcgcCCCGCCgGCGCcAGGCg- -3'
miRNA:   3'- caCGUUGa-----GGGCGGgCGCGcUCUGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.