miRNA display CGI


Results 21 - 40 of 361 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6677 5' -61.1 NC_001847.1 + 53199 0.65 0.689645
Target:  5'- -cGCGGuguuaacgaauaugUUgCCGCCCuugauguccagguGCGCGAGGCCGc -3'
miRNA:   3'- caCGUU--------------GAgGGCGGG-------------CGCGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 129471 0.66 0.644121
Target:  5'- -gGCGGC-CgCCGCCgCGCGCGAcGGCg- -3'
miRNA:   3'- caCGUUGaG-GGCGG-GCGCGCU-CUGgc -5'
6677 5' -61.1 NC_001847.1 + 60137 0.66 0.644121
Target:  5'- -cGCuGGCccCCCGCCCGCcgGCG-GACUGa -3'
miRNA:   3'- caCG-UUGa-GGGCGGGCG--CGCuCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 363 0.66 0.654059
Target:  5'- -cGCccCggggCCCGcCCCGCGCGccgcgcgccGGACCGc -3'
miRNA:   3'- caCGuuGa---GGGC-GGGCGCGC---------UCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 110657 0.66 0.672891
Target:  5'- uGUGCAACUuggccagcgucaaCCUGCCgcgcugcgUGCGCGAGGgUGa -3'
miRNA:   3'- -CACGUUGA-------------GGGCGG--------GCGCGCUCUgGC- -5'
6677 5' -61.1 NC_001847.1 + 2541 0.66 0.644121
Target:  5'- -gGCGgcGCUCCCG-CCGC-CG-GGCCGg -3'
miRNA:   3'- caCGU--UGAGGGCgGGCGcGCuCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 57802 0.66 0.644121
Target:  5'- -gGCGugUCgCCGCCCagcaGCGCGcAGugCc -3'
miRNA:   3'- caCGUugAG-GGCGGG----CGCGC-UCugGc -5'
6677 5' -61.1 NC_001847.1 + 31355 0.66 0.673879
Target:  5'- -gGCGGCggaagcCCCGCCgGCcCGGGuGCCGg -3'
miRNA:   3'- caCGUUGa-----GGGCGGgCGcGCUC-UGGC- -5'
6677 5' -61.1 NC_001847.1 + 915 0.66 0.654059
Target:  5'- -gGCcGCcgCCCGCCgGCGcCGGGAagcCCGa -3'
miRNA:   3'- caCGuUGa-GGGCGGgCGC-GCUCU---GGC- -5'
6677 5' -61.1 NC_001847.1 + 59799 0.66 0.654059
Target:  5'- -cGCGcuuuuaccACUgCCGCCCGCcCGGGAgCGc -3'
miRNA:   3'- caCGU--------UGAgGGCGGGCGcGCUCUgGC- -5'
6677 5' -61.1 NC_001847.1 + 79689 0.66 0.673879
Target:  5'- -cGCGGCgcgcgcCCCGCCgGCGCcAGGCg- -3'
miRNA:   3'- caCGUUGa-----GGGCGGgCGCGcUCUGgc -5'
6677 5' -61.1 NC_001847.1 + 88526 0.66 0.673879
Target:  5'- uGUGCuuCaCCaCGCUCGUgcgccGCGAGGCCGc -3'
miRNA:   3'- -CACGuuGaGG-GCGGGCG-----CGCUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 50607 0.66 0.634173
Target:  5'- -cGCAcgccccGC-CCCGCCCGCcaaccauaccGCuaagGAGACCGg -3'
miRNA:   3'- caCGU------UGaGGGCGGGCG----------CG----CUCUGGC- -5'
6677 5' -61.1 NC_001847.1 + 93687 0.66 0.637158
Target:  5'- cGUGCAGCUCUCGuuccgguucaugggcCCCG-GCGAcucgcaucgcaccGGCCGg -3'
miRNA:   3'- -CACGUUGAGGGC---------------GGGCgCGCU-------------CUGGC- -5'
6677 5' -61.1 NC_001847.1 + 70211 0.66 0.653066
Target:  5'- -aGCGGCcacccgcCCCGCCggcguuggugugaCGCGCGGGGCgGg -3'
miRNA:   3'- caCGUUGa------GGGCGG-------------GCGCGCUCUGgC- -5'
6677 5' -61.1 NC_001847.1 + 99028 0.66 0.663981
Target:  5'- -cGCGGCUUCguggaaggCGCCCaGCGCGucGCCGc -3'
miRNA:   3'- caCGUUGAGG--------GCGGG-CGCGCucUGGC- -5'
6677 5' -61.1 NC_001847.1 + 104217 0.66 0.663981
Target:  5'- aUGCGAaggcCUCCCGCCgcaccgccggCGCGCGccucACCGg -3'
miRNA:   3'- cACGUU----GAGGGCGG----------GCGCGCuc--UGGC- -5'
6677 5' -61.1 NC_001847.1 + 71886 0.66 0.68276
Target:  5'- -cGCGGCccguuguugucuuUCCCaGCCCGUGCGc-GCCGu -3'
miRNA:   3'- caCGUUG-------------AGGG-CGGGCGCGCucUGGC- -5'
6677 5' -61.1 NC_001847.1 + 129933 0.66 0.654059
Target:  5'- -cGCAGCUUCCGUCgCGgCGCGcuuGCCGc -3'
miRNA:   3'- caCGUUGAGGGCGG-GC-GCGCuc-UGGC- -5'
6677 5' -61.1 NC_001847.1 + 130938 0.66 0.654059
Target:  5'- -cGCAggGCUUuggCUGCCUGCGCGcGGCCc -3'
miRNA:   3'- caCGU--UGAG---GGCGGGCGCGCuCUGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.