Results 1 - 20 of 361 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6677 | 5' | -61.1 | NC_001847.1 | + | 118234 | 1.09 | 0.000937 |
Target: 5'- aGUGCAACUCCCGCCCGCGCGAGACCGg -3' miRNA: 3'- -CACGUUGAGGGCGGGCGCGCUCUGGC- -5' |
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6677 | 5' | -61.1 | NC_001847.1 | + | 60850 | 0.84 | 0.052743 |
Target: 5'- -aGCAGCUCCgCGCCCGC-CGAGGCCa -3' miRNA: 3'- caCGUUGAGG-GCGGGCGcGCUCUGGc -5' |
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6677 | 5' | -61.1 | NC_001847.1 | + | 60505 | 0.8 | 0.101062 |
Target: 5'- -aGCAGCUgcCCCGCCuCGCGCGAGGCg- -3' miRNA: 3'- caCGUUGA--GGGCGG-GCGCGCUCUGgc -5' |
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6677 | 5' | -61.1 | NC_001847.1 | + | 112964 | 0.79 | 0.117779 |
Target: 5'- cUGCAGCUCUCGCCCGaGC-AGGCCGg -3' miRNA: 3'- cACGUUGAGGGCGGGCgCGcUCUGGC- -5' |
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6677 | 5' | -61.1 | NC_001847.1 | + | 10151 | 0.79 | 0.117779 |
Target: 5'- cUGCAGCUCUCGCCCGaGC-AGGCCGg -3' miRNA: 3'- cACGUUGAGGGCGGGCgCGcUCUGGC- -5' |
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6677 | 5' | -61.1 | NC_001847.1 | + | 46751 | 0.78 | 0.140523 |
Target: 5'- -cGaCGGCgcgCCCGCCCgccGCGCGGGGCCGg -3' miRNA: 3'- caC-GUUGa--GGGCGGG---CGCGCUCUGGC- -5' |
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6677 | 5' | -61.1 | NC_001847.1 | + | 129312 | 0.76 | 0.175654 |
Target: 5'- gGUGCAagGCgggCCUGCCgGgCGCGGGGCCGg -3' miRNA: 3'- -CACGU--UGa--GGGCGGgC-GCGCUCUGGC- -5' |
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6677 | 5' | -61.1 | NC_001847.1 | + | 89903 | 0.76 | 0.180008 |
Target: 5'- -cGCGGCgCCCGagguugugCCGCGCGAGGCCGc -3' miRNA: 3'- caCGUUGaGGGCg-------GGCGCGCUCUGGC- -5' |
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6677 | 5' | -61.1 | NC_001847.1 | + | 40952 | 0.76 | 0.193647 |
Target: 5'- -cGCAGCgccucgaaCUGCCCGCGCGAGGCgGc -3' miRNA: 3'- caCGUUGag------GGCGGGCGCGCUCUGgC- -5' |
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6677 | 5' | -61.1 | NC_001847.1 | + | 26499 | 0.76 | 0.175654 |
Target: 5'- gGUGCAagGCgggCCUGCCgGgCGCGGGGCCGg -3' miRNA: 3'- -CACGU--UGa--GGGCGGgC-GCGCUCUGGC- -5' |
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6677 | 5' | -61.1 | NC_001847.1 | + | 122025 | 0.75 | 0.21839 |
Target: 5'- -cGCGGCg-CCGCCCGCGCGccccGGCCGc -3' miRNA: 3'- caCGUUGagGGCGGGCGCGCu---CUGGC- -5' |
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6677 | 5' | -61.1 | NC_001847.1 | + | 63014 | 0.75 | 0.229022 |
Target: 5'- cUGCAGCaCgCGCCgCGCGCGAaGGCCGg -3' miRNA: 3'- cACGUUGaGgGCGG-GCGCGCU-CUGGC- -5' |
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6677 | 5' | -61.1 | NC_001847.1 | + | 30008 | 0.75 | 0.223652 |
Target: 5'- -cGCcGCUgCCCGCCCGCGUgcuGGGGCCc -3' miRNA: 3'- caCGuUGA-GGGCGGGCGCG---CUCUGGc -5' |
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6677 | 5' | -61.1 | NC_001847.1 | + | 132821 | 0.75 | 0.223652 |
Target: 5'- -cGCcGCUgCCCGCCCGCGUgcuGGGGCCc -3' miRNA: 3'- caCGuUGA-GGGCGGGCGCG---CUCUGGc -5' |
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6677 | 5' | -61.1 | NC_001847.1 | + | 83932 | 0.75 | 0.223121 |
Target: 5'- -aGCAGggCCCGCUcgaagugCGCGCGGGGCCGg -3' miRNA: 3'- caCGUUgaGGGCGG-------GCGCGCUCUGGC- -5' |
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6677 | 5' | -61.1 | NC_001847.1 | + | 91694 | 0.75 | 0.211708 |
Target: 5'- cUGCGGCUCCCGCuucgcucucgggcaCCGCGCGAcgcgaGGCCc -3' miRNA: 3'- cACGUUGAGGGCG--------------GGCGCGCU-----CUGGc -5' |
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6677 | 5' | -61.1 | NC_001847.1 | + | 113396 | 0.74 | 0.245785 |
Target: 5'- -gGCGGC-CCC-CCCGCGCGcgcGGGCCGg -3' miRNA: 3'- caCGUUGaGGGcGGGCGCGC---UCUGGC- -5' |
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6677 | 5' | -61.1 | NC_001847.1 | + | 74622 | 0.74 | 0.257518 |
Target: 5'- cGUGCAGCUgggCagCGCCuCGCGCGAGGCgGg -3' miRNA: 3'- -CACGUUGA---Gg-GCGG-GCGCGCUCUGgC- -5' |
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6677 | 5' | -61.1 | NC_001847.1 | + | 103691 | 0.74 | 0.257518 |
Target: 5'- -cGCGGCggCgGCCCGCGCcGGGGCCGc -3' miRNA: 3'- caCGUUGagGgCGGGCGCG-CUCUGGC- -5' |
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6677 | 5' | -61.1 | NC_001847.1 | + | 40905 | 0.74 | 0.251595 |
Target: 5'- -aGCcGCUCCacgGCCCGCGCGGGcGCCc -3' miRNA: 3'- caCGuUGAGGg--CGGGCGCGCUC-UGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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