miRNA display CGI


Results 1 - 20 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6679 3' -58.4 NC_001847.1 + 119474 1.08 0.001425
Target:  5'- aCUACCCGCAGGAGGCACACAAGGCCAu -3'
miRNA:   3'- -GAUGGGCGUCCUCCGUGUGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 61413 0.85 0.064698
Target:  5'- aCUGCCCucGCGGGAGGCGCuCGAGGUCAa -3'
miRNA:   3'- -GAUGGG--CGUCCUCCGUGuGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 130833 0.83 0.080202
Target:  5'- aCUACCCGCAGGcGGCGCGCGAGuaccaaggcGCCGg -3'
miRNA:   3'- -GAUGGGCGUCCuCCGUGUGUUC---------CGGU- -5'
6679 3' -58.4 NC_001847.1 + 59495 0.81 0.11026
Target:  5'- -aGCCgGCAGGGGGUGCGcCGAGGCCGc -3'
miRNA:   3'- gaUGGgCGUCCUCCGUGU-GUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 68201 0.81 0.122441
Target:  5'- -aGCCCGCacaguAGGGGGCGCACG-GGCCGc -3'
miRNA:   3'- gaUGGGCG-----UCCUCCGUGUGUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 106815 0.8 0.135862
Target:  5'- gCUGCCCGCcGGcgagcGGCACGCAGGGUCGg -3'
miRNA:   3'- -GAUGGGCGuCCu----CCGUGUGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 123297 0.79 0.15854
Target:  5'- -cGCCCGCAGGGcGGCGCcaGAGGCCu -3'
miRNA:   3'- gaUGGGCGUCCU-CCGUGugUUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 42003 0.79 0.16683
Target:  5'- --uCCCGCGGGGGGCGCcgGCAGcccGGCCAg -3'
miRNA:   3'- gauGGGCGUCCUCCGUG--UGUU---CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 1234 0.78 0.189273
Target:  5'- -cGCCCGCAGGccAGGUACACc-GGCCGc -3'
miRNA:   3'- gaUGGGCGUCC--UCCGUGUGuuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 104047 0.78 0.189273
Target:  5'- -cGCCCGCAGGccAGGUACACc-GGCCGc -3'
miRNA:   3'- gaUGGGCGUCC--UCCGUGUGuuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 38869 0.77 0.203981
Target:  5'- cCUGCUCGCAGuGGGGCAaggccCACAaggGGGCCAu -3'
miRNA:   3'- -GAUGGGCGUC-CUCCGU-----GUGU---UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 43000 0.77 0.203981
Target:  5'- -aACgCCGCcgGGGGGGCGCGCcGGGCCGc -3'
miRNA:   3'- gaUG-GGCG--UCCUCCGUGUGuUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 95333 0.76 0.230692
Target:  5'- -gGCCgaaggCGCAGGGGGCGCagccaggggaGCGGGGCCAg -3'
miRNA:   3'- gaUGG-----GCGUCCUCCGUG----------UGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 90105 0.76 0.242177
Target:  5'- ---aCCGCGGGGGGCGCugAGGGUgAg -3'
miRNA:   3'- gaugGGCGUCCUCCGUGugUUCCGgU- -5'
6679 3' -58.4 NC_001847.1 + 64462 0.76 0.248096
Target:  5'- -cGCCCGC-GGcGGCGCGgGGGGCCGa -3'
miRNA:   3'- gaUGGGCGuCCuCCGUGUgUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 115103 0.76 0.260293
Target:  5'- uUGCCCGCgcccAGGGcGGCGgcCGCAGGGCCGc -3'
miRNA:   3'- gAUGGGCG----UCCU-CCGU--GUGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 7895 0.75 0.266573
Target:  5'- cCUAgCCGCGcGGGGCGCGCGGcGGCCGc -3'
miRNA:   3'- -GAUgGGCGUcCUCCGUGUGUU-CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 108364 0.75 0.272975
Target:  5'- -gGCgCGCAGGAgGGCGCGCGcacugaccAGGCCGc -3'
miRNA:   3'- gaUGgGCGUCCU-CCGUGUGU--------UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 51635 0.75 0.272975
Target:  5'- ---aCCGCAGGaAGGCACGCAGcGCCGc -3'
miRNA:   3'- gaugGGCGUCC-UCCGUGUGUUcCGGU- -5'
6679 3' -58.4 NC_001847.1 + 91166 0.75 0.279499
Target:  5'- cCU-CCCGCGuuuuGGGGCgGCACAAGGCCAg -3'
miRNA:   3'- -GAuGGGCGUc---CUCCG-UGUGUUCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.