miRNA display CGI


Results 1 - 20 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6679 3' -58.4 NC_001847.1 + 135 0.69 0.560772
Target:  5'- -cGCCCGCGGGccucGGGCcccggcCGgGGGGCCGg -3'
miRNA:   3'- gaUGGGCGUCC----UCCGu-----GUgUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 570 0.67 0.7135
Target:  5'- -gACCUGCcuGGcGGCG-ACGAGGCCGu -3'
miRNA:   3'- gaUGGGCGu-CCuCCGUgUGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 995 0.66 0.732338
Target:  5'- ---gCCGCGGcGGcGGCACGCGcuccaccAGGCCGc -3'
miRNA:   3'- gaugGGCGUC-CU-CCGUGUGU-------UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 1234 0.78 0.189273
Target:  5'- -cGCCCGCAGGccAGGUACACc-GGCCGc -3'
miRNA:   3'- gaUGGGCGUCC--UCCGUGUGuuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 1661 0.66 0.743104
Target:  5'- cCUGCCCGaCGGccGGGCcguCGCGcGGCCAg -3'
miRNA:   3'- -GAUGGGC-GUCc-UCCGu--GUGUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 2098 0.67 0.683268
Target:  5'- -gGCCCGCGcGGcggcGGGC-CGCGAucucGGCCAg -3'
miRNA:   3'- gaUGGGCGU-CC----UCCGuGUGUU----CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 2432 0.66 0.771831
Target:  5'- --cCCCGC-GGcGGCcgGCAGGGCCGc -3'
miRNA:   3'- gauGGGCGuCCuCCGugUGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 3786 0.66 0.762368
Target:  5'- -cGCCCGCGccgccGAaGCGCACGcGGCCGg -3'
miRNA:   3'- gaUGGGCGUc----CUcCGUGUGUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 4003 0.7 0.550721
Target:  5'- --cCCCGCGGGGcgccgggcccGGCGCccgccucucGCGGGGCCGc -3'
miRNA:   3'- gauGGGCGUCCU----------CCGUG---------UGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 4193 0.73 0.367505
Target:  5'- -cGCCCGUGGGccGCGCGCAGGcaGCCAa -3'
miRNA:   3'- gaUGGGCGUCCucCGUGUGUUC--CGGU- -5'
6679 3' -58.4 NC_001847.1 + 4434 0.68 0.631123
Target:  5'- -cGCgCCGCAGGGaaacGCGCACGccgugaaAGGCCGc -3'
miRNA:   3'- gaUG-GGCGUCCUc---CGUGUGU-------UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 4548 0.66 0.743104
Target:  5'- -cGCCCGCGGGuGGCGCGgCGuGGa-- -3'
miRNA:   3'- gaUGGGCGUCCuCCGUGU-GUuCCggu -5'
6679 3' -58.4 NC_001847.1 + 4956 0.66 0.75279
Target:  5'- -cGCCCGUcucuucAGGccGGGCGCccGCGGGGUCGu -3'
miRNA:   3'- gaUGGGCG------UCC--UCCGUG--UGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 5252 0.66 0.762368
Target:  5'- --cUCCGCgggggAGGGGGCGCuuGAGGCgAa -3'
miRNA:   3'- gauGGGCG-----UCCUCCGUGugUUCCGgU- -5'
6679 3' -58.4 NC_001847.1 + 5662 0.66 0.75279
Target:  5'- -gGCCCGCcc-AGGCGCGaagguGGGCCGg -3'
miRNA:   3'- gaUGGGCGuccUCCGUGUgu---UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 5737 0.69 0.560772
Target:  5'- cCUGCCCGCGGGGcGGUuCGCc--GCCAa -3'
miRNA:   3'- -GAUGGGCGUCCU-CCGuGUGuucCGGU- -5'
6679 3' -58.4 NC_001847.1 + 6090 0.69 0.560772
Target:  5'- -cGCUCGC-GGAGGCGCgagacgcccGCGAGGCgCGg -3'
miRNA:   3'- gaUGGGCGuCCUCCGUG---------UGUUCCG-GU- -5'
6679 3' -58.4 NC_001847.1 + 6691 0.72 0.418131
Target:  5'- -gGCCgGcCGGGcGcGCGCGCAGGGCCGa -3'
miRNA:   3'- gaUGGgC-GUCCuC-CGUGUGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 7895 0.75 0.266573
Target:  5'- cCUAgCCGCGcGGGGCGCGCGGcGGCCGc -3'
miRNA:   3'- -GAUgGGCGUcCUCCGUGUGUU-CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 8450 0.66 0.771831
Target:  5'- -gGCgCCGgGucGGAGGCgGCGCcGGGCCGg -3'
miRNA:   3'- gaUG-GGCgU--CCUCCG-UGUGuUCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.