Results 1 - 20 of 340 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6679 | 3' | -58.4 | NC_001847.1 | + | 135 | 0.69 | 0.560772 |
Target: 5'- -cGCCCGCGGGccucGGGCcccggcCGgGGGGCCGg -3' miRNA: 3'- gaUGGGCGUCC----UCCGu-----GUgUUCCGGU- -5' |
|||||||
6679 | 3' | -58.4 | NC_001847.1 | + | 570 | 0.67 | 0.7135 |
Target: 5'- -gACCUGCcuGGcGGCG-ACGAGGCCGu -3' miRNA: 3'- gaUGGGCGu-CCuCCGUgUGUUCCGGU- -5' |
|||||||
6679 | 3' | -58.4 | NC_001847.1 | + | 995 | 0.66 | 0.732338 |
Target: 5'- ---gCCGCGGcGGcGGCACGCGcuccaccAGGCCGc -3' miRNA: 3'- gaugGGCGUC-CU-CCGUGUGU-------UCCGGU- -5' |
|||||||
6679 | 3' | -58.4 | NC_001847.1 | + | 1234 | 0.78 | 0.189273 |
Target: 5'- -cGCCCGCAGGccAGGUACACc-GGCCGc -3' miRNA: 3'- gaUGGGCGUCC--UCCGUGUGuuCCGGU- -5' |
|||||||
6679 | 3' | -58.4 | NC_001847.1 | + | 1661 | 0.66 | 0.743104 |
Target: 5'- cCUGCCCGaCGGccGGGCcguCGCGcGGCCAg -3' miRNA: 3'- -GAUGGGC-GUCc-UCCGu--GUGUuCCGGU- -5' |
|||||||
6679 | 3' | -58.4 | NC_001847.1 | + | 2098 | 0.67 | 0.683268 |
Target: 5'- -gGCCCGCGcGGcggcGGGC-CGCGAucucGGCCAg -3' miRNA: 3'- gaUGGGCGU-CC----UCCGuGUGUU----CCGGU- -5' |
|||||||
6679 | 3' | -58.4 | NC_001847.1 | + | 2432 | 0.66 | 0.771831 |
Target: 5'- --cCCCGC-GGcGGCcgGCAGGGCCGc -3' miRNA: 3'- gauGGGCGuCCuCCGugUGUUCCGGU- -5' |
|||||||
6679 | 3' | -58.4 | NC_001847.1 | + | 3786 | 0.66 | 0.762368 |
Target: 5'- -cGCCCGCGccgccGAaGCGCACGcGGCCGg -3' miRNA: 3'- gaUGGGCGUc----CUcCGUGUGUuCCGGU- -5' |
|||||||
6679 | 3' | -58.4 | NC_001847.1 | + | 4003 | 0.7 | 0.550721 |
Target: 5'- --cCCCGCGGGGcgccgggcccGGCGCccgccucucGCGGGGCCGc -3' miRNA: 3'- gauGGGCGUCCU----------CCGUG---------UGUUCCGGU- -5' |
|||||||
6679 | 3' | -58.4 | NC_001847.1 | + | 4193 | 0.73 | 0.367505 |
Target: 5'- -cGCCCGUGGGccGCGCGCAGGcaGCCAa -3' miRNA: 3'- gaUGGGCGUCCucCGUGUGUUC--CGGU- -5' |
|||||||
6679 | 3' | -58.4 | NC_001847.1 | + | 4434 | 0.68 | 0.631123 |
Target: 5'- -cGCgCCGCAGGGaaacGCGCACGccgugaaAGGCCGc -3' miRNA: 3'- gaUG-GGCGUCCUc---CGUGUGU-------UCCGGU- -5' |
|||||||
6679 | 3' | -58.4 | NC_001847.1 | + | 4548 | 0.66 | 0.743104 |
Target: 5'- -cGCCCGCGGGuGGCGCGgCGuGGa-- -3' miRNA: 3'- gaUGGGCGUCCuCCGUGU-GUuCCggu -5' |
|||||||
6679 | 3' | -58.4 | NC_001847.1 | + | 4956 | 0.66 | 0.75279 |
Target: 5'- -cGCCCGUcucuucAGGccGGGCGCccGCGGGGUCGu -3' miRNA: 3'- gaUGGGCG------UCC--UCCGUG--UGUUCCGGU- -5' |
|||||||
6679 | 3' | -58.4 | NC_001847.1 | + | 5252 | 0.66 | 0.762368 |
Target: 5'- --cUCCGCgggggAGGGGGCGCuuGAGGCgAa -3' miRNA: 3'- gauGGGCG-----UCCUCCGUGugUUCCGgU- -5' |
|||||||
6679 | 3' | -58.4 | NC_001847.1 | + | 5662 | 0.66 | 0.75279 |
Target: 5'- -gGCCCGCcc-AGGCGCGaagguGGGCCGg -3' miRNA: 3'- gaUGGGCGuccUCCGUGUgu---UCCGGU- -5' |
|||||||
6679 | 3' | -58.4 | NC_001847.1 | + | 5737 | 0.69 | 0.560772 |
Target: 5'- cCUGCCCGCGGGGcGGUuCGCc--GCCAa -3' miRNA: 3'- -GAUGGGCGUCCU-CCGuGUGuucCGGU- -5' |
|||||||
6679 | 3' | -58.4 | NC_001847.1 | + | 6090 | 0.69 | 0.560772 |
Target: 5'- -cGCUCGC-GGAGGCGCgagacgcccGCGAGGCgCGg -3' miRNA: 3'- gaUGGGCGuCCUCCGUG---------UGUUCCG-GU- -5' |
|||||||
6679 | 3' | -58.4 | NC_001847.1 | + | 6691 | 0.72 | 0.418131 |
Target: 5'- -gGCCgGcCGGGcGcGCGCGCAGGGCCGa -3' miRNA: 3'- gaUGGgC-GUCCuC-CGUGUGUUCCGGU- -5' |
|||||||
6679 | 3' | -58.4 | NC_001847.1 | + | 7895 | 0.75 | 0.266573 |
Target: 5'- cCUAgCCGCGcGGGGCGCGCGGcGGCCGc -3' miRNA: 3'- -GAUgGGCGUcCUCCGUGUGUU-CCGGU- -5' |
|||||||
6679 | 3' | -58.4 | NC_001847.1 | + | 8450 | 0.66 | 0.771831 |
Target: 5'- -gGCgCCGgGucGGAGGCgGCGCcGGGCCGg -3' miRNA: 3'- gaUG-GGCgU--CCUCCG-UGUGuUCCGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home