miRNA display CGI


Results 1 - 20 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6679 3' -58.4 NC_001847.1 + 135131 0.66 0.762368
Target:  5'- -gGgUCGCAGGGGGCcCGCGcGGCgCGg -3'
miRNA:   3'- gaUgGGCGUCCUCCGuGUGUuCCG-GU- -5'
6679 3' -58.4 NC_001847.1 + 135021 0.75 0.286147
Target:  5'- -gGCCCGCGGGcgGGGCcgggGCGCGGGGCg- -3'
miRNA:   3'- gaUGGGCGUCC--UCCG----UGUGUUCCGgu -5'
6679 3' -58.4 NC_001847.1 + 134454 0.66 0.75279
Target:  5'- aCUugCgGCAGGGcaagauGGCAUagGCGcGGCCAa -3'
miRNA:   3'- -GAugGgCGUCCU------CCGUG--UGUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 134415 0.69 0.601408
Target:  5'- -gGCCCGCGGGAagggagggagGGgGCGCGAcGGCg- -3'
miRNA:   3'- gaUGGGCGUCCU----------CCgUGUGUU-CCGgu -5'
6679 3' -58.4 NC_001847.1 + 134188 0.66 0.75279
Target:  5'- -cGCCCgGCGcagcguGGAgcGGCGCGCGcGGGCCGa -3'
miRNA:   3'- gaUGGG-CGU------CCU--CCGUGUGU-UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 133922 0.7 0.511133
Target:  5'- -gGCCUGCGGGcGGCGCGCGcuGGaGCUg -3'
miRNA:   3'- gaUGGGCGUCCuCCGUGUGU--UC-CGGu -5'
6679 3' -58.4 NC_001847.1 + 133805 0.66 0.733321
Target:  5'- -gGCCgCGCAGGGcgcGGCGCugG-GGCUc -3'
miRNA:   3'- gaUGG-GCGUCCU---CCGUGugUuCCGGu -5'
6679 3' -58.4 NC_001847.1 + 133630 0.75 0.279499
Target:  5'- -cGCgCGCGGGGGGaACACAacGGGCCAa -3'
miRNA:   3'- gaUGgGCGUCCUCCgUGUGU--UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 133167 0.74 0.328652
Target:  5'- gCUGCCCG-GGGAGGCGCugGcGGCg- -3'
miRNA:   3'- -GAUGGGCgUCCUCCGUGugUuCCGgu -5'
6679 3' -58.4 NC_001847.1 + 132320 0.67 0.70348
Target:  5'- -aGCCCGCcggcGGAGGUgccgGCGCGGcuggcGGCCGc -3'
miRNA:   3'- gaUGGGCGu---CCUCCG----UGUGUU-----CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 132136 0.66 0.74213
Target:  5'- -gGCCCGCGacgcgguGGAGcGCGCGCGGcuccagcgcgcGGCCc -3'
miRNA:   3'- gaUGGGCGU-------CCUC-CGUGUGUU-----------CCGGu -5'
6679 3' -58.4 NC_001847.1 + 132013 0.69 0.601408
Target:  5'- gCUGCUCGCGGGgcugcucguaaAGGCGCucuACcuGGCCGc -3'
miRNA:   3'- -GAUGGGCGUCC-----------UCCGUG---UGuuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 131971 0.73 0.383906
Target:  5'- -cGCCUGCcGcGAGGCGCugGAGGCg- -3'
miRNA:   3'- gaUGGGCGuC-CUCCGUGugUUCCGgu -5'
6679 3' -58.4 NC_001847.1 + 131902 0.68 0.618816
Target:  5'- cCUGCCgccggcgagcacggCGCGGGcGGCGCGCGAgcGGCUg -3'
miRNA:   3'- -GAUGG--------------GCGUCCuCCGUGUGUU--CCGGu -5'
6679 3' -58.4 NC_001847.1 + 131155 0.67 0.70348
Target:  5'- --cCCCGCGGGGccGCGCGCccGGGCCc -3'
miRNA:   3'- gauGGGCGUCCUc-CGUGUGu-UCCGGu -5'
6679 3' -58.4 NC_001847.1 + 131125 0.69 0.581017
Target:  5'- --cCCCGCGaGAGGCGgGCGccGGGCCc -3'
miRNA:   3'- gauGGGCGUcCUCCGUgUGU--UCCGGu -5'
6679 3' -58.4 NC_001847.1 + 130950 0.67 0.6934
Target:  5'- gCUGCCUGCGcgcGGcccacGGGCGCGCGgcccaaaacaAGGCCc -3'
miRNA:   3'- -GAUGGGCGU---CC-----UCCGUGUGU----------UCCGGu -5'
6679 3' -58.4 NC_001847.1 + 130859 0.67 0.7135
Target:  5'- -aGCCgagGCGGGGgcGGCGCcccuCAAGGCCGa -3'
miRNA:   3'- gaUGGg--CGUCCU--CCGUGu---GUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 130833 0.83 0.080202
Target:  5'- aCUACCCGCAGGcGGCGCGCGAGuaccaaggcGCCGg -3'
miRNA:   3'- -GAUGGGCGUCCuCCGUGUGUUC---------CGGU- -5'
6679 3' -58.4 NC_001847.1 + 130702 0.66 0.781169
Target:  5'- -gACgUCGC-GGAGuGCGC-CGAGGCCGa -3'
miRNA:   3'- gaUG-GGCGuCCUC-CGUGuGUUCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.