Results 1 - 20 of 340 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6679 | 3' | -58.4 | NC_001847.1 | + | 4548 | 0.66 | 0.743104 |
Target: 5'- -cGCCCGCGGGuGGCGCGgCGuGGa-- -3' miRNA: 3'- gaUGGGCGUCCuCCGUGU-GUuCCggu -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 33673 | 0.66 | 0.733321 |
Target: 5'- -gGCCCGCGcGGGGCuagagGCGCAGGcGCUc -3' miRNA: 3'- gaUGGGCGUcCUCCG-----UGUGUUC-CGGu -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 66033 | 0.66 | 0.740179 |
Target: 5'- -gACCUGgAGGAGGUAUACGcgcacgucggcggcGGcGCCGg -3' miRNA: 3'- gaUGGGCgUCCUCCGUGUGU--------------UC-CGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 132136 | 0.66 | 0.74213 |
Target: 5'- -gGCCCGCGacgcgguGGAGcGCGCGCGGcuccagcgcgcGGCCc -3' miRNA: 3'- gaUGGGCGU-------CCUC-CGUGUGUU-----------CCGGu -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 95316 | 0.66 | 0.743104 |
Target: 5'- -cGCCaCGCAGGAaGCGCuc-GGGCCc -3' miRNA: 3'- gaUGG-GCGUCCUcCGUGuguUCCGGu -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 57022 | 0.66 | 0.75279 |
Target: 5'- gUGCCUGCugcagaacaAGGAGcGCGCcCuguGGGCCGa -3' miRNA: 3'- gAUGGGCG---------UCCUC-CGUGuGu--UCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 133805 | 0.66 | 0.733321 |
Target: 5'- -gGCCgCGCAGGGcgcGGCGCugG-GGCUc -3' miRNA: 3'- gaUGG-GCGUCCU---CCGUGugUuCCGGu -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 104474 | 0.66 | 0.743104 |
Target: 5'- cCUGCCCGaCGGccGGGCcguCGCGcGGCCAg -3' miRNA: 3'- -GAUGGGC-GUCc-UCCGu--GUGUuCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 108475 | 0.66 | 0.75279 |
Target: 5'- -gGCCCGCcc-AGGCGCGaagguGGGCCGg -3' miRNA: 3'- gaUGGGCGuccUCCGUGUgu---UCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 20970 | 0.66 | 0.733321 |
Target: 5'- cCUAUaaGCGGGcGcGCGCACuAGGCCu -3' miRNA: 3'- -GAUGggCGUCCuC-CGUGUGuUCCGGu -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 4956 | 0.66 | 0.75279 |
Target: 5'- -cGCCCGUcucuucAGGccGGGCGCccGCGGGGUCGu -3' miRNA: 3'- gaUGGGCG------UCC--UCCGUG--UGUUCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 13109 | 0.66 | 0.743104 |
Target: 5'- uUugUCGCGGccGGGGCGCGCGGGcggcGCCGc -3' miRNA: 3'- gAugGGCGUC--CUCCGUGUGUUC----CGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 70690 | 0.66 | 0.743104 |
Target: 5'- ---aCCGCGGGcccgGGGCugGCcguGGCCGc -3' miRNA: 3'- gaugGGCGUCC----UCCGugUGuu-CCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 36177 | 0.66 | 0.733321 |
Target: 5'- -cGCuuGCGGcGGuGCGCgGCGAGGCCGc -3' miRNA: 3'- gaUGggCGUCcUC-CGUG-UGUUCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 103809 | 0.66 | 0.732338 |
Target: 5'- -cGCCgGC-GGcGGCACGCGcuccaccAGGCCGc -3' miRNA: 3'- gaUGGgCGuCCuCCGUGUGU-------UCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 15011 | 0.66 | 0.743104 |
Target: 5'- -cGgCCGCGGuGGGGcCGCGCGAgccgcGGCCGc -3' miRNA: 3'- gaUgGGCGUC-CUCC-GUGUGUU-----CCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 69568 | 0.66 | 0.75279 |
Target: 5'- gUGCCU--GGGGGGC-CACGuGGCCGu -3' miRNA: 3'- gAUGGGcgUCCUCCGuGUGUuCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 87859 | 0.66 | 0.75279 |
Target: 5'- -gGCCCGCGGGccuguGGU-CGCuguGGCCGc -3' miRNA: 3'- gaUGGGCGUCCu----CCGuGUGuu-CCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 75645 | 0.66 | 0.743104 |
Target: 5'- aUGCCggaGCcGGAGGCGCGgGcguugcucgugaAGGCCGg -3' miRNA: 3'- gAUGGg--CGuCCUCCGUGUgU------------UCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 32753 | 0.66 | 0.743104 |
Target: 5'- gCUAUuuUCGCGGGcGGCGCuucGCGAcGGCCGg -3' miRNA: 3'- -GAUG--GGCGUCCuCCGUG---UGUU-CCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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