miRNA display CGI


Results 1 - 20 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6679 3' -58.4 NC_001847.1 + 15011 0.66 0.743104
Target:  5'- -cGgCCGCGGuGGGGcCGCGCGAgccgcGGCCGc -3'
miRNA:   3'- gaUgGGCGUC-CUCC-GUGUGUU-----CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 75645 0.66 0.743104
Target:  5'- aUGCCggaGCcGGAGGCGCGgGcguugcucgugaAGGCCGg -3'
miRNA:   3'- gAUGGg--CGuCCUCCGUGUgU------------UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 108475 0.66 0.75279
Target:  5'- -gGCCCGCcc-AGGCGCGaagguGGGCCGg -3'
miRNA:   3'- gaUGGGCGuccUCCGUGUgu---UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 57022 0.66 0.75279
Target:  5'- gUGCCUGCugcagaacaAGGAGcGCGCcCuguGGGCCGa -3'
miRNA:   3'- gAUGGGCG---------UCCUC-CGUGuGu--UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 20970 0.66 0.733321
Target:  5'- cCUAUaaGCGGGcGcGCGCACuAGGCCu -3'
miRNA:   3'- -GAUGggCGUCCuC-CGUGUGuUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 4956 0.66 0.75279
Target:  5'- -cGCCCGUcucuucAGGccGGGCGCccGCGGGGUCGu -3'
miRNA:   3'- gaUGGGCG------UCC--UCCGUG--UGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 69568 0.66 0.75279
Target:  5'- gUGCCU--GGGGGGC-CACGuGGCCGu -3'
miRNA:   3'- gAUGGGcgUCCUCCGuGUGUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 70690 0.66 0.743104
Target:  5'- ---aCCGCGGGcccgGGGCugGCcguGGCCGc -3'
miRNA:   3'- gaugGGCGUCC----UCCGugUGuu-CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 33673 0.66 0.733321
Target:  5'- -gGCCCGCGcGGGGCuagagGCGCAGGcGCUc -3'
miRNA:   3'- gaUGGGCGUcCUCCG-----UGUGUUC-CGGu -5'
6679 3' -58.4 NC_001847.1 + 95316 0.66 0.743104
Target:  5'- -cGCCaCGCAGGAaGCGCuc-GGGCCc -3'
miRNA:   3'- gaUGG-GCGUCCUcCGUGuguUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 32753 0.66 0.743104
Target:  5'- gCUAUuuUCGCGGGcGGCGCuucGCGAcGGCCGg -3'
miRNA:   3'- -GAUG--GGCGUCCuCCGUG---UGUU-CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 66033 0.66 0.740179
Target:  5'- -gACCUGgAGGAGGUAUACGcgcacgucggcggcGGcGCCGg -3'
miRNA:   3'- gaUGGGCgUCCUCCGUGUGU--------------UC-CGGU- -5'
6679 3' -58.4 NC_001847.1 + 132136 0.66 0.74213
Target:  5'- -gGCCCGCGacgcgguGGAGcGCGCGCGGcuccagcgcgcGGCCc -3'
miRNA:   3'- gaUGGGCGU-------CCUC-CGUGUGUU-----------CCGGu -5'
6679 3' -58.4 NC_001847.1 + 87859 0.66 0.75279
Target:  5'- -gGCCCGCGGGccuguGGU-CGCuguGGCCGc -3'
miRNA:   3'- gaUGGGCGUCCu----CCGuGUGuu-CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 104474 0.66 0.743104
Target:  5'- cCUGCCCGaCGGccGGGCcguCGCGcGGCCAg -3'
miRNA:   3'- -GAUGGGC-GUCc-UCCGu--GUGUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 36177 0.66 0.733321
Target:  5'- -cGCuuGCGGcGGuGCGCgGCGAGGCCGc -3'
miRNA:   3'- gaUGggCGUCcUC-CGUG-UGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 103809 0.66 0.732338
Target:  5'- -cGCCgGC-GGcGGCACGCGcuccaccAGGCCGc -3'
miRNA:   3'- gaUGGgCGuCCuCCGUGUGU-------UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 133805 0.66 0.733321
Target:  5'- -gGCCgCGCAGGGcgcGGCGCugG-GGCUc -3'
miRNA:   3'- gaUGG-GCGUCCU---CCGUGugUuCCGGu -5'
6679 3' -58.4 NC_001847.1 + 13109 0.66 0.743104
Target:  5'- uUugUCGCGGccGGGGCGCGCGGGcggcGCCGc -3'
miRNA:   3'- gAugGGCGUC--CUCCGUGUGUUC----CGGU- -5'
6679 3' -58.4 NC_001847.1 + 4548 0.66 0.743104
Target:  5'- -cGCCCGCGGGuGGCGCGgCGuGGa-- -3'
miRNA:   3'- gaUGGGCGUCCuCCGUGU-GUuCCggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.