miRNA display CGI


Results 21 - 40 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6679 3' -58.4 NC_001847.1 + 57022 0.66 0.75279
Target:  5'- gUGCCUGCugcagaacaAGGAGcGCGCcCuguGGGCCGa -3'
miRNA:   3'- gAUGGGCG---------UCCUC-CGUGuGu--UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 54466 0.66 0.759507
Target:  5'- -aGCCCgaggaggaggGCGGGAcggacaacgacggcGGCGC-CGGGGCCGg -3'
miRNA:   3'- gaUGGG----------CGUCCU--------------CCGUGuGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 28097 0.66 0.766168
Target:  5'- cCUGCCCG-GGGccGCGCGCGAcaccgccgauuucauGGCCGg -3'
miRNA:   3'- -GAUGGGCgUCCucCGUGUGUU---------------CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 4548 0.66 0.743104
Target:  5'- -cGCCCGCGGGuGGCGCGgCGuGGa-- -3'
miRNA:   3'- gaUGGGCGUCCuCCGUGU-GUuCCggu -5'
6679 3' -58.4 NC_001847.1 + 32753 0.66 0.743104
Target:  5'- gCUAUuuUCGCGGGcGGCGCuucGCGAcGGCCGg -3'
miRNA:   3'- -GAUG--GGCGUCCuCCGUG---UGUU-CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 20970 0.66 0.733321
Target:  5'- cCUAUaaGCGGGcGcGCGCACuAGGCCu -3'
miRNA:   3'- -GAUGggCGUCCuC-CGUGUGuUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 81582 0.66 0.780241
Target:  5'- -gGCCgGCggcuacGGGAGcgucguuGUGCACGAGGCCGc -3'
miRNA:   3'- gaUGGgCG------UCCUC-------CGUGUGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 75120 0.66 0.771831
Target:  5'- uUGCCCGagaAGGcccGGGCcccGC-CGGGGCCGg -3'
miRNA:   3'- gAUGGGCg--UCC---UCCG---UGuGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 13438 0.66 0.761416
Target:  5'- -gGCCUGCGcuGGcuguaucuagcGGGCGCGCAccugcucGGGCCGc -3'
miRNA:   3'- gaUGGGCGU--CC-----------UCCGUGUGU-------UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 66033 0.66 0.740179
Target:  5'- -gACCUGgAGGAGGUAUACGcgcacgucggcggcGGcGCCGg -3'
miRNA:   3'- gaUGGGCgUCCUCCGUGUGU--------------UC-CGGU- -5'
6679 3' -58.4 NC_001847.1 + 4956 0.66 0.75279
Target:  5'- -cGCCCGUcucuucAGGccGGGCGCccGCGGGGUCGu -3'
miRNA:   3'- gaUGGGCG------UCC--UCCGUG--UGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 33673 0.66 0.733321
Target:  5'- -gGCCCGCGcGGGGCuagagGCGCAGGcGCUc -3'
miRNA:   3'- gaUGGGCGUcCUCCG-----UGUGUUC-CGGu -5'
6679 3' -58.4 NC_001847.1 + 124949 0.66 0.769005
Target:  5'- -gGCCCgGCGGcGGcggcGGCGCGCAaaagccggcgcagcGGGCCGg -3'
miRNA:   3'- gaUGGG-CGUC-CU----CCGUGUGU--------------UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 87668 0.66 0.771831
Target:  5'- gCUGCgCCGCAuGGcccGGGCGCugG-GGCUg -3'
miRNA:   3'- -GAUG-GGCGU-CC---UCCGUGugUuCCGGu -5'
6679 3' -58.4 NC_001847.1 + 13109 0.66 0.743104
Target:  5'- uUugUCGCGGccGGGGCGCGCGGGcggcGCCGc -3'
miRNA:   3'- gAugGGCGUC--CUCCGUGUGUUC----CGGU- -5'
6679 3' -58.4 NC_001847.1 + 5252 0.66 0.762368
Target:  5'- --cUCCGCgggggAGGGGGCGCuuGAGGCgAa -3'
miRNA:   3'- gauGGGCG-----UCCUCCGUGugUUCCGgU- -5'
6679 3' -58.4 NC_001847.1 + 129651 0.66 0.766168
Target:  5'- -aGCCCGCGGaacaagaaaGAGGCGCggggaaaggagagagACGcGGCCGc -3'
miRNA:   3'- gaUGGGCGUC---------CUCCGUG---------------UGUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 21319 0.66 0.762368
Target:  5'- -cGCCaCGC-GG-GGUGC-CAAGGCCAu -3'
miRNA:   3'- gaUGG-GCGuCCuCCGUGuGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 24180 0.66 0.771831
Target:  5'- gUACUCGCacAGcGuGGCGCugGuGGCCAu -3'
miRNA:   3'- gAUGGGCG--UC-CuCCGUGugUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 36177 0.66 0.733321
Target:  5'- -cGCuuGCGGcGGuGCGCgGCGAGGCCGc -3'
miRNA:   3'- gaUGggCGUCcUC-CGUG-UGUUCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.