miRNA display CGI


Results 21 - 40 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6679 3' -58.4 NC_001847.1 + 8598 0.67 0.7135
Target:  5'- --cCCCGcCAGG-GGCgGCGCucGGCCGg -3'
miRNA:   3'- gauGGGC-GUCCuCCG-UGUGuuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 10775 0.67 0.673094
Target:  5'- -cGCgCGCGGGAagagcGGUACGCG-GGCCu -3'
miRNA:   3'- gaUGgGCGUCCU-----CCGUGUGUuCCGGu -5'
6679 3' -58.4 NC_001847.1 + 11360 0.66 0.75279
Target:  5'- -cGCCgCGCAGGccccgAGGCcaauGCAaguCAGGGCCGc -3'
miRNA:   3'- gaUGG-GCGUCC-----UCCG----UGU---GUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 11681 0.69 0.611642
Target:  5'- -aGCCCGC-GGcGGCcguCGCcGGGCCAa -3'
miRNA:   3'- gaUGGGCGuCCuCCGu--GUGuUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 12003 0.67 0.683268
Target:  5'- -aACCCGCuaguuGGcucugGGGCGCcgGCGAGGUCGu -3'
miRNA:   3'- gaUGGGCGu----CC-----UCCGUG--UGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 12043 0.71 0.444984
Target:  5'- -cAUCCGCAGGGGGguUGCuagcGGGCCc -3'
miRNA:   3'- gaUGGGCGUCCUCCguGUGu---UCCGGu -5'
6679 3' -58.4 NC_001847.1 + 12085 0.68 0.662887
Target:  5'- -aGCgCCGCGGGuccGGCGCcCGcGGCCGu -3'
miRNA:   3'- gaUG-GGCGUCCu--CCGUGuGUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 13109 0.66 0.743104
Target:  5'- uUugUCGCGGccGGGGCGCGCGGGcggcGCCGc -3'
miRNA:   3'- gAugGGCGUC--CUCCGUGUGUUC----CGGU- -5'
6679 3' -58.4 NC_001847.1 + 13252 0.68 0.632149
Target:  5'- -gGCCaCGCGGGcGGUuCGCAggcAGGCCGc -3'
miRNA:   3'- gaUGG-GCGUCCuCCGuGUGU---UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 13438 0.66 0.761416
Target:  5'- -gGCCUGCGcuGGcuguaucuagcGGGCGCGCAccugcucGGGCCGc -3'
miRNA:   3'- gaUGGGCGU--CC-----------UCCGUGUGU-------UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 13931 0.67 0.702474
Target:  5'- gUGCCgCGCcgcggcaGGGGGGCcgccccGCGCAAGuGCCGc -3'
miRNA:   3'- gAUGG-GCG-------UCCUCCG------UGUGUUC-CGGU- -5'
6679 3' -58.4 NC_001847.1 + 14197 0.71 0.491782
Target:  5'- -gGCUgGCGGcGGGGCugGCGgucAGGCCGg -3'
miRNA:   3'- gaUGGgCGUC-CUCCGugUGU---UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 14398 0.69 0.611642
Target:  5'- -gGCCuUGCAGGAGGCGaccgagccucugUGCGGGGCUc -3'
miRNA:   3'- gaUGG-GCGUCCUCCGU------------GUGUUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 14906 0.67 0.70348
Target:  5'- -cGCCUGCAGGAaauuuuGGCGuacgcCGCGAcGGCCu -3'
miRNA:   3'- gaUGGGCGUCCU------CCGU-----GUGUU-CCGGu -5'
6679 3' -58.4 NC_001847.1 + 15011 0.66 0.743104
Target:  5'- -cGgCCGCGGuGGGGcCGCGCGAgccgcGGCCGc -3'
miRNA:   3'- gaUgGGCGUC-CUCC-GUGUGUU-----CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 16341 0.67 0.6934
Target:  5'- -gACCgGCAcggccuGGAGGCGCugGcGGCUg -3'
miRNA:   3'- gaUGGgCGU------CCUCCGUGugUuCCGGu -5'
6679 3' -58.4 NC_001847.1 + 17599 0.69 0.611642
Target:  5'- -gGCCCGCggaaAGGGGuuGCGCAcGGCCu -3'
miRNA:   3'- gaUGGGCG----UCCUCcgUGUGUuCCGGu -5'
6679 3' -58.4 NC_001847.1 + 17806 0.68 0.642405
Target:  5'- -cGgCCGCGGGGGGCG----AGGCCGc -3'
miRNA:   3'- gaUgGGCGUCCUCCGUguguUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 18119 0.66 0.75279
Target:  5'- -aGCuCCGCGGcgguGGGGCGCGCGcgaaagucaaAGGUCAg -3'
miRNA:   3'- gaUG-GGCGUC----CUCCGUGUGU----------UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 18408 0.7 0.530793
Target:  5'- -gGCCCGCGGGgcugucgaacAGcGCGCGCGGGuauGCCAg -3'
miRNA:   3'- gaUGGGCGUCC----------UC-CGUGUGUUC---CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.