miRNA display CGI


Results 41 - 60 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6679 3' -58.4 NC_001847.1 + 18467 0.68 0.642405
Target:  5'- -cGCCCGCAgcgccGGAccCACACGcAGGCCAc -3'
miRNA:   3'- gaUGGGCGU-----CCUccGUGUGU-UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 18503 0.67 0.70348
Target:  5'- gUGCCCGCGGcugccGAGGCcaGCGCugcGGGCg- -3'
miRNA:   3'- gAUGGGCGUC-----CUCCG--UGUGu--UCCGgu -5'
6679 3' -58.4 NC_001847.1 + 18661 0.73 0.359487
Target:  5'- -gAUCCgGCGGGAgugcaGGUACGCGAGGCCc -3'
miRNA:   3'- gaUGGG-CGUCCU-----CCGUGUGUUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 19427 0.67 0.7135
Target:  5'- -cGCCCGUGGcGGcaaGCGCACAcGGGCCGc -3'
miRNA:   3'- gaUGGGCGUC-CUc--CGUGUGU-UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 20389 0.71 0.482234
Target:  5'- -cGCUCGCGGGuGGCuCACcggugauuagaAAGGCCAc -3'
miRNA:   3'- gaUGGGCGUCCuCCGuGUG-----------UUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 20970 0.66 0.733321
Target:  5'- cCUAUaaGCGGGcGcGCGCACuAGGCCu -3'
miRNA:   3'- -GAUGggCGUCCuC-CGUGUGuUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 21319 0.66 0.762368
Target:  5'- -cGCCaCGC-GG-GGUGC-CAAGGCCAu -3'
miRNA:   3'- gaUGG-GCGuCCuCCGUGuGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 21514 0.68 0.662887
Target:  5'- -cGCCUcgGCGGGGGcCGCGCG-GGCCAa -3'
miRNA:   3'- gaUGGG--CGUCCUCcGUGUGUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 21748 0.7 0.510157
Target:  5'- -gGCCCGCgcgcgcgGGGGGGCcgccgGCGCcGGGCCc -3'
miRNA:   3'- gaUGGGCG-------UCCUCCG-----UGUGuUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 22136 0.66 0.769005
Target:  5'- -gGCCCgGCGGcGGcggcGGCGCGCAaaagccggcgcagcGGGCCGg -3'
miRNA:   3'- gaUGGG-CGUC-CU----CCGUGUGU--------------UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 22360 0.67 0.72345
Target:  5'- gUGCUgGCAGacuacugggacGAGGCcccCGCGGGGCCGg -3'
miRNA:   3'- gAUGGgCGUC-----------CUCCGu--GUGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 23823 0.69 0.581017
Target:  5'- aCUGCUCGCGGuccAGcGCGCGCAcGGCCc -3'
miRNA:   3'- -GAUGGGCGUCc--UC-CGUGUGUuCCGGu -5'
6679 3' -58.4 NC_001847.1 + 24180 0.66 0.771831
Target:  5'- gUACUCGCacAGcGuGGCGCugGuGGCCAu -3'
miRNA:   3'- gAUGGGCG--UC-CuCCGUGugUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 24325 0.67 0.687326
Target:  5'- uUGCCCGCGcGGGGGCGauguccaagUggagggggggcccgaGCAGGGCCc -3'
miRNA:   3'- gAUGGGCGU-CCUCCGU---------G---------------UGUUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 24957 0.73 0.383906
Target:  5'- uUGCCCgGCAGGuGGCGCAgCAacAGaGCCAu -3'
miRNA:   3'- gAUGGG-CGUCCuCCGUGU-GU--UC-CGGU- -5'
6679 3' -58.4 NC_001847.1 + 26004 0.71 0.491782
Target:  5'- -gGCgCGCAGGc-GCGCACAaaaaGGGCCAa -3'
miRNA:   3'- gaUGgGCGUCCucCGUGUGU----UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 26731 0.69 0.570873
Target:  5'- -aACgCGCAGGcGGGCACgu-GGGCCGu -3'
miRNA:   3'- gaUGgGCGUCC-UCCGUGuguUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 26838 0.66 0.766168
Target:  5'- -aGCCCGCGGaacaagaaaGAGGCGCggggaaaggagagagACGcGGCCGc -3'
miRNA:   3'- gaUGGGCGUC---------CUCCGUG---------------UGUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 27088 0.67 0.673094
Target:  5'- -cGCCCacGCuGGAGGCGuCGcCGAGGUCGc -3'
miRNA:   3'- gaUGGG--CGuCCUCCGU-GU-GUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 27142 0.69 0.611642
Target:  5'- aCUGCCgucCGGGGGGCGCagccGCGGcGGCCAg -3'
miRNA:   3'- -GAUGGgc-GUCCUCCGUG----UGUU-CCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.