miRNA display CGI


Results 41 - 60 of 340 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6679 3' -58.4 NC_001847.1 + 135021 0.75 0.286147
Target:  5'- -gGCCCGCGGGcgGGGCcgggGCGCGGGGCg- -3'
miRNA:   3'- gaUGGGCGUCC--UCCG----UGUGUUCCGgu -5'
6679 3' -58.4 NC_001847.1 + 63853 0.74 0.306837
Target:  5'- cCUGCgCGCGGGGGGCgcauGCGCGAcGGCUg -3'
miRNA:   3'- -GAUGgGCGUCCUCCG----UGUGUU-CCGGu -5'
6679 3' -58.4 NC_001847.1 + 54113 0.74 0.306837
Target:  5'- -cGCCgCGCGGGAGGCGCagcaccggcuGCAAguGGCCGc -3'
miRNA:   3'- gaUGG-GCGUCCUCCGUG----------UGUU--CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 120499 0.74 0.313983
Target:  5'- -cGCUCGCAGcGAgcGGCGCGCGAGcGCCGc -3'
miRNA:   3'- gaUGGGCGUC-CU--CCGUGUGUUC-CGGU- -5'
6679 3' -58.4 NC_001847.1 + 48833 0.74 0.321255
Target:  5'- cCUugCCGCGcGGGGGCGC-CucGGCCGc -3'
miRNA:   3'- -GAugGGCGU-CCUCCGUGuGuuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 133167 0.74 0.328652
Target:  5'- gCUGCCCG-GGGAGGCGCugGcGGCg- -3'
miRNA:   3'- -GAUGGGCgUCCUCCGUGugUuCCGgu -5'
6679 3' -58.4 NC_001847.1 + 83937 0.74 0.328652
Target:  5'- -gGCCCGCucGaAGuGCGCGCGGGGCCGg -3'
miRNA:   3'- gaUGGGCGucC-UC-CGUGUGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 62953 0.73 0.351592
Target:  5'- -gACCCGgAGuAGGCACACGcaaucGGGCCGc -3'
miRNA:   3'- gaUGGGCgUCcUCCGUGUGU-----UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 4193 0.73 0.367505
Target:  5'- -cGCCCGUGGGccGCGCGCAGGcaGCCAa -3'
miRNA:   3'- gaUGGGCGUCCucCGUGUGUUC--CGGU- -5'
6679 3' -58.4 NC_001847.1 + 127770 0.73 0.383906
Target:  5'- uUGCCCgGCAGGuGGCGCAgCAacAGaGCCAu -3'
miRNA:   3'- gAUGGG-CGUCCuCCGUGU-GU--UC-CGGU- -5'
6679 3' -58.4 NC_001847.1 + 131971 0.73 0.383906
Target:  5'- -cGCCUGCcGcGAGGCGCugGAGGCg- -3'
miRNA:   3'- gaUGGGCGuC-CUCCGUGugUUCCGgu -5'
6679 3' -58.4 NC_001847.1 + 62791 0.72 0.408534
Target:  5'- -gGCCCGgGGGGGcgagaucGCGCACAagccGGGCCGa -3'
miRNA:   3'- gaUGGGCgUCCUC-------CGUGUGU----UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 86034 0.72 0.418131
Target:  5'- aCUGCUgCGCugguugGGcGAGGCGCugGGGGCCAc -3'
miRNA:   3'- -GAUGG-GCG------UC-CUCCGUGugUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 6691 0.72 0.418131
Target:  5'- -gGCCgGcCGGGcGcGCGCGCAGGGCCGa -3'
miRNA:   3'- gaUGGgC-GUCCuC-CGUGUGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 116757 0.72 0.418131
Target:  5'- -gGCCCGCAGGcgAGGaCGC-CGAGGCa- -3'
miRNA:   3'- gaUGGGCGUCC--UCC-GUGuGUUCCGgu -5'
6679 3' -58.4 NC_001847.1 + 83192 0.71 0.444984
Target:  5'- ---aCgGCGGGGGGCGCGCAgacgagcuuGGGCCc -3'
miRNA:   3'- gaugGgCGUCCUCCGUGUGU---------UCCGGu -5'
6679 3' -58.4 NC_001847.1 + 76390 0.71 0.454148
Target:  5'- -gGCCuCGgGGGGGGCGCcgGGGGCCGc -3'
miRNA:   3'- gaUGG-GCgUCCUCCGUGugUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 119023 0.71 0.454148
Target:  5'- -gACCCGCAGGugGGGCGCACGcuguGGGa-- -3'
miRNA:   3'- gaUGGGCGUCC--UCCGUGUGU----UCCggu -5'
6679 3' -58.4 NC_001847.1 + 39835 0.71 0.463413
Target:  5'- cCUGCCgGCGccgcgccuGGAGGCGC-CAGcGGCCGc -3'
miRNA:   3'- -GAUGGgCGU--------CCUCCGUGuGUU-CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 45839 0.71 0.482234
Target:  5'- -cACUCGCuGGGcGGCACGgcCGAGGCCu -3'
miRNA:   3'- gaUGGGCGuCCU-CCGUGU--GUUCCGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.