Results 21 - 40 of 340 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6679 | 3' | -58.4 | NC_001847.1 | + | 127770 | 0.73 | 0.383906 |
Target: 5'- uUGCCCgGCAGGuGGCGCAgCAacAGaGCCAu -3' miRNA: 3'- gAUGGG-CGUCCuCCGUGU-GU--UC-CGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 119474 | 1.08 | 0.001425 |
Target: 5'- aCUACCCGCAGGAGGCACACAAGGCCAu -3' miRNA: 3'- -GAUGGGCGUCCUCCGUGUGUUCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 59495 | 0.81 | 0.11026 |
Target: 5'- -aGCCgGCAGGGGGUGCGcCGAGGCCGc -3' miRNA: 3'- gaUGGgCGUCCUCCGUGU-GUUCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 68201 | 0.81 | 0.122441 |
Target: 5'- -aGCCCGCacaguAGGGGGCGCACG-GGCCGc -3' miRNA: 3'- gaUGGGCG-----UCCUCCGUGUGUuCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 104047 | 0.78 | 0.189273 |
Target: 5'- -cGCCCGCAGGccAGGUACACc-GGCCGc -3' miRNA: 3'- gaUGGGCGUCC--UCCGUGUGuuCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 43000 | 0.77 | 0.203981 |
Target: 5'- -aACgCCGCcgGGGGGGCGCGCcGGGCCGc -3' miRNA: 3'- gaUG-GGCG--UCCUCCGUGUGuUCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 90105 | 0.76 | 0.242177 |
Target: 5'- ---aCCGCGGGGGGCGCugAGGGUgAg -3' miRNA: 3'- gaugGGCGUCCUCCGUGugUUCCGgU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 64462 | 0.76 | 0.248096 |
Target: 5'- -cGCCCGC-GGcGGCGCGgGGGGCCGa -3' miRNA: 3'- gaUGGGCGuCCuCCGUGUgUUCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 7895 | 0.75 | 0.266573 |
Target: 5'- cCUAgCCGCGcGGGGCGCGCGGcGGCCGc -3' miRNA: 3'- -GAUgGGCGUcCUCCGUGUGUU-CCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 91166 | 0.75 | 0.279499 |
Target: 5'- cCU-CCCGCGuuuuGGGGCgGCACAAGGCCAg -3' miRNA: 3'- -GAuGGGCGUc---CUCCG-UGUGUUCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 135021 | 0.75 | 0.286147 |
Target: 5'- -gGCCCGCGGGcgGGGCcgggGCGCGGGGCg- -3' miRNA: 3'- gaUGGGCGUCC--UCCG----UGUGUUCCGgu -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 63853 | 0.74 | 0.306837 |
Target: 5'- cCUGCgCGCGGGGGGCgcauGCGCGAcGGCUg -3' miRNA: 3'- -GAUGgGCGUCCUCCG----UGUGUU-CCGGu -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 54113 | 0.74 | 0.306837 |
Target: 5'- -cGCCgCGCGGGAGGCGCagcaccggcuGCAAguGGCCGc -3' miRNA: 3'- gaUGG-GCGUCCUCCGUG----------UGUU--CCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 120499 | 0.74 | 0.313983 |
Target: 5'- -cGCUCGCAGcGAgcGGCGCGCGAGcGCCGc -3' miRNA: 3'- gaUGGGCGUC-CU--CCGUGUGUUC-CGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 48833 | 0.74 | 0.321255 |
Target: 5'- cCUugCCGCGcGGGGGCGC-CucGGCCGc -3' miRNA: 3'- -GAugGGCGU-CCUCCGUGuGuuCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 133167 | 0.74 | 0.328652 |
Target: 5'- gCUGCCCG-GGGAGGCGCugGcGGCg- -3' miRNA: 3'- -GAUGGGCgUCCUCCGUGugUuCCGgu -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 83937 | 0.74 | 0.328652 |
Target: 5'- -gGCCCGCucGaAGuGCGCGCGGGGCCGg -3' miRNA: 3'- gaUGGGCGucC-UC-CGUGUGUUCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 62953 | 0.73 | 0.351592 |
Target: 5'- -gACCCGgAGuAGGCACACGcaaucGGGCCGc -3' miRNA: 3'- gaUGGGCgUCcUCCGUGUGU-----UCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 4193 | 0.73 | 0.367505 |
Target: 5'- -cGCCCGUGGGccGCGCGCAGGcaGCCAa -3' miRNA: 3'- gaUGGGCGUCCucCGUGUGUUC--CGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 131971 | 0.73 | 0.383906 |
Target: 5'- -cGCCUGCcGcGAGGCGCugGAGGCg- -3' miRNA: 3'- gaUGGGCGuC-CUCCGUGugUUCCGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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