miRNA display CGI


Results 21 - 40 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6679 3' -58.4 NC_001847.1 + 129217 0.66 0.783944
Target:  5'- uUGCUCGCGGcGAccgcuaaugggcccgGGCGCACAAucugcgacggcgcGGCCGc -3'
miRNA:   3'- gAUGGGCGUC-CU---------------CCGUGUGUU-------------CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 88721 0.66 0.746991
Target:  5'- -cGCCCG-AGGAGGCugugcugcucgauaaGCAgcAGGCCGc -3'
miRNA:   3'- gaUGGGCgUCCUCCG---------------UGUguUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 11360 0.66 0.75279
Target:  5'- -cGCCgCGCAGGccccgAGGCcaauGCAaguCAGGGCCGc -3'
miRNA:   3'- gaUGG-GCGUCC-----UCCG----UGU---GUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 100505 0.66 0.75279
Target:  5'- -cGCgCCGCucGGccucGGCGCGCAGGcGCCGg -3'
miRNA:   3'- gaUG-GGCGu-CCu---CCGUGUGUUC-CGGU- -5'
6679 3' -58.4 NC_001847.1 + 46896 0.66 0.769005
Target:  5'- -aGCgCCGCuucagcgaggcuucGGGGGGCGCGucGGGCCc -3'
miRNA:   3'- gaUG-GGCG--------------UCCUCCGUGUguUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 118447 0.66 0.737245
Target:  5'- gCU-CCUGCuGGuGGCggccucgugccugcgGCGCAAGGCCc -3'
miRNA:   3'- -GAuGGGCGuCCuCCG---------------UGUGUUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 1661 0.66 0.743104
Target:  5'- cCUGCCCGaCGGccGGGCcguCGCGcGGCCAg -3'
miRNA:   3'- -GAUGGGC-GUCc-UCCGu--GUGUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 65009 0.66 0.771831
Target:  5'- -gAgCUGCuGGAuGGCGCGCAugcgcauGGCCGa -3'
miRNA:   3'- gaUgGGCGuCCU-CCGUGUGUu------CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 96187 0.66 0.75279
Target:  5'- -gGCCgGCAGc-GGCAaugGCGGGGCCGg -3'
miRNA:   3'- gaUGGgCGUCcuCCGUg--UGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 18119 0.66 0.75279
Target:  5'- -aGCuCCGCGGcgguGGGGCGCGCGcgaaagucaaAGGUCAg -3'
miRNA:   3'- gaUG-GGCGUC----CUCCGUGUGU----------UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 2432 0.66 0.771831
Target:  5'- --cCCCGC-GGcGGCcgGCAGGGCCGc -3'
miRNA:   3'- gauGGGCGuCCuCCGugUGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 27889 0.66 0.781169
Target:  5'- -gACgUCGC-GGAGuGCGC-CGAGGCCGa -3'
miRNA:   3'- gaUG-GGCGuCCUC-CGUGuGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 30992 0.66 0.733321
Target:  5'- -gGCCgCGCAGGGcgcGGCGCugG-GGCUc -3'
miRNA:   3'- gaUGG-GCGUCCU---CCGUGugUuCCGGu -5'
6679 3' -58.4 NC_001847.1 + 52906 0.66 0.733321
Target:  5'- cCUAggUCCGCGGGcagcggcucgGGGCGCccGCgAAGGCCGu -3'
miRNA:   3'- -GAU--GGGCGUCC----------UCCGUG--UG-UUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 5662 0.66 0.75279
Target:  5'- -gGCCCGCcc-AGGCGCGaagguGGGCCGg -3'
miRNA:   3'- gaUGGGCGuccUCCGUGUgu---UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 3786 0.66 0.762368
Target:  5'- -cGCCCGCGccgccGAaGCGCACGcGGCCGg -3'
miRNA:   3'- gaUGGGCGUc----CUcCGUGUGUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 22136 0.66 0.769005
Target:  5'- -gGCCCgGCGGcGGcggcGGCGCGCAaaagccggcgcagcGGGCCGg -3'
miRNA:   3'- gaUGGG-CGUC-CU----CCGUGUGU--------------UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 96477 0.66 0.781169
Target:  5'- -gGCuuGCGGGcGGCGgGCGucGCCAc -3'
miRNA:   3'- gaUGggCGUCCuCCGUgUGUucCGGU- -5'
6679 3' -58.4 NC_001847.1 + 60860 0.66 0.75279
Target:  5'- -cGCCCGCc-GAGGCcaGCGCAgcgcgcgcgcGGGCCc -3'
miRNA:   3'- gaUGGGCGucCUCCG--UGUGU----------UCCGGu -5'
6679 3' -58.4 NC_001847.1 + 74829 0.66 0.75279
Target:  5'- -cGCgaGCAGGuGGCGCGCGcGcGCCGc -3'
miRNA:   3'- gaUGggCGUCCuCCGUGUGUuC-CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.