miRNA display CGI


Results 1 - 20 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6679 3' -58.4 NC_001847.1 + 129217 0.66 0.783944
Target:  5'- uUGCUCGCGGcGAccgcuaaugggcccgGGCGCACAAucugcgacggcgcGGCCGc -3'
miRNA:   3'- gAUGGGCGUC-CU---------------CCGUGUGUU-------------CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 98931 0.66 0.762368
Target:  5'- -aGgCCGcCAGGAgGGCGCGCAGccccucguacgcGGCCu -3'
miRNA:   3'- gaUgGGC-GUCCU-CCGUGUGUU------------CCGGu -5'
6679 3' -58.4 NC_001847.1 + 134188 0.66 0.75279
Target:  5'- -cGCCCgGCGcagcguGGAgcGGCGCGCGcGGGCCGa -3'
miRNA:   3'- gaUGGG-CGU------CCU--CCGUGUGU-UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 130833 0.83 0.080202
Target:  5'- aCUACCCGCAGGcGGCGCGCGAGuaccaaggcGCCGg -3'
miRNA:   3'- -GAUGGGCGUCCuCCGUGUGUUC---------CGGU- -5'
6679 3' -58.4 NC_001847.1 + 96477 0.66 0.781169
Target:  5'- -gGCuuGCGGGcGGCGgGCGucGCCAc -3'
miRNA:   3'- gaUGggCGUCCuCCGUgUGUucCGGU- -5'
6679 3' -58.4 NC_001847.1 + 27889 0.66 0.781169
Target:  5'- -gACgUCGC-GGAGuGCGC-CGAGGCCGa -3'
miRNA:   3'- gaUG-GGCGuCCUC-CGUGuGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 114546 0.66 0.771831
Target:  5'- uUAgCCGCgAGGGcaugcuGGUACACAGcGGCCu -3'
miRNA:   3'- gAUgGGCG-UCCU------CCGUGUGUU-CCGGu -5'
6679 3' -58.4 NC_001847.1 + 65009 0.66 0.771831
Target:  5'- -gAgCUGCuGGAuGGCGCGCAugcgcauGGCCGa -3'
miRNA:   3'- gaUgGGCGuCCU-CCGUGUGUu------CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 69290 0.66 0.769005
Target:  5'- -cGCCgCGCAGGaAGGCgucguagagguccgACACcacgccguGGGCCAg -3'
miRNA:   3'- gaUGG-GCGUCC-UCCG--------------UGUGu-------UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 100615 0.66 0.762368
Target:  5'- -cGCCCgGCGGGcGGCGCAUcgccGGcGCCGu -3'
miRNA:   3'- gaUGGG-CGUCCuCCGUGUGu---UC-CGGU- -5'
6679 3' -58.4 NC_001847.1 + 22136 0.66 0.769005
Target:  5'- -gGCCCgGCGGcGGcggcGGCGCGCAaaagccggcgcagcGGGCCGg -3'
miRNA:   3'- gaUGGG-CGUC-CU----CCGUGUGU--------------UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 8450 0.66 0.771831
Target:  5'- -gGCgCCGgGucGGAGGCgGCGCcGGGCCGg -3'
miRNA:   3'- gaUG-GGCgU--CCUCCG-UGUGuUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 99921 0.66 0.781169
Target:  5'- -cGCCUGCAGcacguccGCGCGCAGGGCg- -3'
miRNA:   3'- gaUGGGCGUCcuc----CGUGUGUUCCGgu -5'
6679 3' -58.4 NC_001847.1 + 26838 0.66 0.766168
Target:  5'- -aGCCCGCGGaacaagaaaGAGGCGCggggaaaggagagagACGcGGCCGc -3'
miRNA:   3'- gaUGGGCGUC---------CUCCGUG---------------UGUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 40965 0.66 0.781169
Target:  5'- aCUGCCCGCGcGAGGCGgcCGCGcccAGcaGCCGc -3'
miRNA:   3'- -GAUGGGCGUcCUCCGU--GUGU---UC--CGGU- -5'
6679 3' -58.4 NC_001847.1 + 42958 0.66 0.771831
Target:  5'- -cGCgCGCGGGGGGgGC---GGGCCGc -3'
miRNA:   3'- gaUGgGCGUCCUCCgUGuguUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 3786 0.66 0.762368
Target:  5'- -cGCCCGCGccgccGAaGCGCACGcGGCCGg -3'
miRNA:   3'- gaUGGGCGUc----CUcCGUGUGUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 74424 0.66 0.762368
Target:  5'- -cGCCCGUcguGGAggucguggcGGCGCACGAcGCCGu -3'
miRNA:   3'- gaUGGGCGu--CCU---------CCGUGUGUUcCGGU- -5'
6679 3' -58.4 NC_001847.1 + 109703 0.66 0.781169
Target:  5'- -gGCCUGCAGucGGCGCugAAGuaCGa -3'
miRNA:   3'- gaUGGGCGUCcuCCGUGugUUCcgGU- -5'
6679 3' -58.4 NC_001847.1 + 2432 0.66 0.771831
Target:  5'- --cCCCGC-GGcGGCcgGCAGGGCCGc -3'
miRNA:   3'- gauGGGCGuCCuCCGugUGUUCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.