miRNA display CGI


Results 1 - 20 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6679 3' -58.4 NC_001847.1 + 131971 0.73 0.383906
Target:  5'- -cGCCUGCcGcGAGGCGCugGAGGCg- -3'
miRNA:   3'- gaUGGGCGuC-CUCCGUGugUUCCGgu -5'
6679 3' -58.4 NC_001847.1 + 54113 0.74 0.306837
Target:  5'- -cGCCgCGCGGGAGGCGCagcaccggcuGCAAguGGCCGc -3'
miRNA:   3'- gaUGG-GCGUCCUCCGUG----------UGUU--CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 120499 0.74 0.313983
Target:  5'- -cGCUCGCAGcGAgcGGCGCGCGAGcGCCGc -3'
miRNA:   3'- gaUGGGCGUC-CU--CCGUGUGUUC-CGGU- -5'
6679 3' -58.4 NC_001847.1 + 48833 0.74 0.321255
Target:  5'- cCUugCCGCGcGGGGGCGC-CucGGCCGc -3'
miRNA:   3'- -GAugGGCGU-CCUCCGUGuGuuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 133167 0.74 0.328652
Target:  5'- gCUGCCCG-GGGAGGCGCugGcGGCg- -3'
miRNA:   3'- -GAUGGGCgUCCUCCGUGugUuCCGgu -5'
6679 3' -58.4 NC_001847.1 + 83937 0.74 0.328652
Target:  5'- -gGCCCGCucGaAGuGCGCGCGGGGCCGg -3'
miRNA:   3'- gaUGGGCGucC-UC-CGUGUGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 62953 0.73 0.351592
Target:  5'- -gACCCGgAGuAGGCACACGcaaucGGGCCGc -3'
miRNA:   3'- gaUGGGCgUCcUCCGUGUGU-----UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 4193 0.73 0.367505
Target:  5'- -cGCCCGUGGGccGCGCGCAGGcaGCCAa -3'
miRNA:   3'- gaUGGGCGUCCucCGUGUGUUC--CGGU- -5'
6679 3' -58.4 NC_001847.1 + 127770 0.73 0.383906
Target:  5'- uUGCCCgGCAGGuGGCGCAgCAacAGaGCCAu -3'
miRNA:   3'- gAUGGG-CGUCCuCCGUGU-GU--UC-CGGU- -5'
6679 3' -58.4 NC_001847.1 + 63853 0.74 0.306837
Target:  5'- cCUGCgCGCGGGGGGCgcauGCGCGAcGGCUg -3'
miRNA:   3'- -GAUGgGCGUCCUCCG----UGUGUU-CCGGu -5'
6679 3' -58.4 NC_001847.1 + 135021 0.75 0.286147
Target:  5'- -gGCCCGCGGGcgGGGCcgggGCGCGGGGCg- -3'
miRNA:   3'- gaUGGGCGUCC--UCCG----UGUGUUCCGgu -5'
6679 3' -58.4 NC_001847.1 + 91166 0.75 0.279499
Target:  5'- cCU-CCCGCGuuuuGGGGCgGCACAAGGCCAg -3'
miRNA:   3'- -GAuGGGCGUc---CUCCG-UGUGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 61413 0.85 0.064698
Target:  5'- aCUGCCCucGCGGGAGGCGCuCGAGGUCAa -3'
miRNA:   3'- -GAUGGG--CGUCCUCCGUGuGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 59495 0.81 0.11026
Target:  5'- -aGCCgGCAGGGGGUGCGcCGAGGCCGc -3'
miRNA:   3'- gaUGGgCGUCCUCCGUGU-GUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 68201 0.81 0.122441
Target:  5'- -aGCCCGCacaguAGGGGGCGCACG-GGCCGc -3'
miRNA:   3'- gaUGGGCG-----UCCUCCGUGUGUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 104047 0.78 0.189273
Target:  5'- -cGCCCGCAGGccAGGUACACc-GGCCGc -3'
miRNA:   3'- gaUGGGCGUCC--UCCGUGUGuuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 43000 0.77 0.203981
Target:  5'- -aACgCCGCcgGGGGGGCGCGCcGGGCCGc -3'
miRNA:   3'- gaUG-GGCG--UCCUCCGUGUGuUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 90105 0.76 0.242177
Target:  5'- ---aCCGCGGGGGGCGCugAGGGUgAg -3'
miRNA:   3'- gaugGGCGUCCUCCGUGugUUCCGgU- -5'
6679 3' -58.4 NC_001847.1 + 64462 0.76 0.248096
Target:  5'- -cGCCCGC-GGcGGCGCGgGGGGCCGa -3'
miRNA:   3'- gaUGGGCGuCCuCCGUGUgUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 7895 0.75 0.266573
Target:  5'- cCUAgCCGCGcGGGGCGCGCGGcGGCCGc -3'
miRNA:   3'- -GAUgGGCGUcCUCCGUGUGUU-CCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.