miRNA display CGI


Results 21 - 40 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6679 3' -58.4 NC_001847.1 + 130671 0.67 0.72345
Target:  5'- -cGCCagggaCGCGGGGGGCGC-CGAGGaCGc -3'
miRNA:   3'- gaUGG-----GCGUCCUCCGUGuGUUCCgGU- -5'
6679 3' -58.4 NC_001847.1 + 130609 0.74 0.321255
Target:  5'- -cACCCGCGGGcGGCcgcCGCGAGGCa- -3'
miRNA:   3'- gaUGGGCGUCCuCCGu--GUGUUCCGgu -5'
6679 3' -58.4 NC_001847.1 + 130605 0.68 0.662887
Target:  5'- -cGCCggagaCGCGGGggccaccgaGGGCGC-CGAGGCCGa -3'
miRNA:   3'- gaUGG-----GCGUCC---------UCCGUGuGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 130485 0.7 0.511133
Target:  5'- cCUGCUcgaCGCGGcgcgucgggcuGAGGCGCGCGAGcGCCGg -3'
miRNA:   3'- -GAUGG---GCGUC-----------CUCCGUGUGUUC-CGGU- -5'
6679 3' -58.4 NC_001847.1 + 129651 0.66 0.766168
Target:  5'- -aGCCCGCGGaacaagaaaGAGGCGCggggaaaggagagagACGcGGCCGc -3'
miRNA:   3'- gaUGGGCGUC---------CUCCGUG---------------UGUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 129217 0.66 0.783944
Target:  5'- uUGCUCGCGGcGAccgcuaaugggcccgGGCGCACAAucugcgacggcgcGGCCGc -3'
miRNA:   3'- gAUGGGCGUC-CU---------------CCGUGUGUU-------------CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 128822 0.69 0.570873
Target:  5'- -cACCCGCGuacguGGccGCGCGCAucgAGGCCGa -3'
miRNA:   3'- gaUGGGCGU-----CCucCGUGUGU---UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 128817 0.71 0.491782
Target:  5'- -gGCgCGCAGGc-GCGCACAaaaaGGGCCAa -3'
miRNA:   3'- gaUGgGCGUCCucCGUGUGU----UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 127770 0.73 0.383906
Target:  5'- uUGCCCgGCAGGuGGCGCAgCAacAGaGCCAu -3'
miRNA:   3'- gAUGGG-CGUCCuCCGUGU-GU--UC-CGGU- -5'
6679 3' -58.4 NC_001847.1 + 127348 0.67 0.673094
Target:  5'- gCUGCCgCgGCAGG-GGCG-GCGGGGCCc -3'
miRNA:   3'- -GAUGG-G-CGUCCuCCGUgUGUUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 127138 0.67 0.687326
Target:  5'- uUGCCCGCGcGGGGGCGauguccaagUggagggggggcccgaGCAGGGCCc -3'
miRNA:   3'- gAUGGGCGU-CCUCCGU---------G---------------UGUUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 125358 0.71 0.448637
Target:  5'- -gGCCagaCGCaacagcauuagcaccGGGGGGCGCGCGAGGUCGa -3'
miRNA:   3'- gaUGG---GCG---------------UCCUCCGUGUGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 125070 0.68 0.661864
Target:  5'- -cGCgCGCGGcGGGGCGCugGGcccgcgcGGCCAa -3'
miRNA:   3'- gaUGgGCGUC-CUCCGUGugUU-------CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 124949 0.66 0.769005
Target:  5'- -gGCCCgGCGGcGGcggcGGCGCGCAaaagccggcgcagcGGGCCGg -3'
miRNA:   3'- gaUGGG-CGUC-CU----CCGUGUGU--------------UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 124762 0.67 0.7135
Target:  5'- -gGCUCGCGGGcGGCACcggGgGGGGCUu -3'
miRNA:   3'- gaUGGGCGUCCuCCGUG---UgUUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 124640 0.68 0.652654
Target:  5'- -gGCCCGCAGca---GCGCGGGGCCGu -3'
miRNA:   3'- gaUGGGCGUCcuccgUGUGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 124561 0.7 0.510157
Target:  5'- -gGCCCGCgcgcgcgGGGGGGCcgccgGCGCcGGGCCc -3'
miRNA:   3'- gaUGGGCG-------UCCUCCG-----UGUGuUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 124430 0.68 0.662887
Target:  5'- aUACUC-CGGGAGGCcCuccucCGAGGCCGg -3'
miRNA:   3'- gAUGGGcGUCCUCCGuGu----GUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 123297 0.79 0.15854
Target:  5'- -cGCCCGCAGGGcGGCGCcaGAGGCCu -3'
miRNA:   3'- gaUGGGCGUCCU-CCGUGugUUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 122810 0.69 0.610618
Target:  5'- -gACUCggGCAGGAccucgauGGCGCGCAgguGGGCCGu -3'
miRNA:   3'- gaUGGG--CGUCCU-------CCGUGUGU---UCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.