Results 1 - 20 of 229 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6684 | 3' | -59.2 | NC_001847.1 | + | 123466 | 1.13 | 0.00065 |
Target: 5'- cGCUGAUGAGGCCGAUGCAGCGCCCCCu -3' miRNA: 3'- -CGACUACUCCGGCUACGUCGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 134026 | 0.89 | 0.029982 |
Target: 5'- cGCUGGUgcugGAGGCCGcgGCGGCGCCgCCCg -3' miRNA: 3'- -CGACUA----CUCCGGCuaCGUCGCGG-GGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 31213 | 0.89 | 0.029982 |
Target: 5'- cGCUGGUgcugGAGGCCGcgGCGGCGCCgCCCg -3' miRNA: 3'- -CGACUA----CUCCGGCuaCGUCGCGG-GGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 34371 | 0.78 | 0.188083 |
Target: 5'- cGCUGAUGcGGCCGAaacaacgGCGGCcGCCgCCg -3' miRNA: 3'- -CGACUACuCCGGCUa------CGUCG-CGGgGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 14326 | 0.77 | 0.197584 |
Target: 5'- uGCUcgcGGUGGGGCCGGgcguggugGCGGCGCCUgCg -3' miRNA: 3'- -CGA---CUACUCCGGCUa-------CGUCGCGGGgG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 86498 | 0.77 | 0.20249 |
Target: 5'- gGCUGcgGGGGCg---GCGGCGCCCCg -3' miRNA: 3'- -CGACuaCUCCGgcuaCGUCGCGGGGg -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 130862 | 0.76 | 0.251543 |
Target: 5'- -----cGAGGCgGggGCGGCGCCCCUc -3' miRNA: 3'- cgacuaCUCCGgCuaCGUCGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 28049 | 0.76 | 0.251543 |
Target: 5'- -----cGAGGCgGggGCGGCGCCCCUc -3' miRNA: 3'- cgacuaCUCCGgCuaCGUCGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 130789 | 0.75 | 0.257561 |
Target: 5'- uGCUGAcguaaucGAGGCCGA-GCuGGCGCCCUa -3' miRNA: 3'- -CGACUa------CUCCGGCUaCG-UCGCGGGGg -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 28079 | 0.74 | 0.30998 |
Target: 5'- aGCgggGAcUGAGGCgGGgggcgGCGGUGCCCUCg -3' miRNA: 3'- -CGa--CU-ACUCCGgCUa----CGUCGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 98774 | 0.74 | 0.30998 |
Target: 5'- cGCUGcccGGGCCGcgGCGGCGCCgCg -3' miRNA: 3'- -CGACuacUCCGGCuaCGUCGCGGgGg -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 130892 | 0.74 | 0.30998 |
Target: 5'- aGCgggGAcUGAGGCgGGgggcgGCGGUGCCCUCg -3' miRNA: 3'- -CGa--CU-ACUCCGgCUa----CGUCGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 55572 | 0.74 | 0.317075 |
Target: 5'- --cGAaGAGGCCGcgaGCccGGCGCCCCCc -3' miRNA: 3'- cgaCUaCUCCGGCua-CG--UCGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 120694 | 0.74 | 0.324293 |
Target: 5'- -----aGAGGCCGcgGCcGCGCaCCCCg -3' miRNA: 3'- cgacuaCUCCGGCuaCGuCGCG-GGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 86041 | 0.73 | 0.336841 |
Target: 5'- cGCUGGUugggcgaggcgcugGGGGCCacgGAUGCgAGCGUCCUCg -3' miRNA: 3'- -CGACUA--------------CUCCGG---CUACG-UCGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 93133 | 0.73 | 0.339092 |
Target: 5'- aGCUGGccGGGCUGc--CGGCGCCCCCc -3' miRNA: 3'- -CGACUacUCCGGCuacGUCGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 107990 | 0.73 | 0.339092 |
Target: 5'- gGCUGGcc--GCCGcgGCuGCGCCCCCc -3' miRNA: 3'- -CGACUacucCGGCuaCGuCGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 43597 | 0.73 | 0.346674 |
Target: 5'- aGCgUGGcgcUGGGGCCGGUGCuGGCcacgGCCCUCa -3' miRNA: 3'- -CG-ACU---ACUCCGGCUACG-UCG----CGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 66907 | 0.73 | 0.35749 |
Target: 5'- cGCUGAUGcaAGcgugcuugcggccccGCCGcgGCccguGCGCCCCCu -3' miRNA: 3'- -CGACUAC--UC---------------CGGCuaCGu---CGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 127061 | 0.73 | 0.362198 |
Target: 5'- cGCcGAUcucGCCGcgGCGGUGCCCCCc -3' miRNA: 3'- -CGaCUAcucCGGCuaCGUCGCGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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