Results 1 - 20 of 229 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6684 | 3' | -59.2 | NC_001847.1 | + | 8486 | 0.66 | 0.769121 |
Target: 5'- cGCUc----GGCCGGggGCGGgGCCCCUu -3' miRNA: 3'- -CGAcuacuCCGGCUa-CGUCgCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 116263 | 0.66 | 0.740726 |
Target: 5'- cGCUGcgGAcucuGGCgccgcucggCGAgGCAGCGUgCCCCg -3' miRNA: 3'- -CGACuaCU----CCG---------GCUaCGUCGCG-GGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 50579 | 0.66 | 0.740726 |
Target: 5'- uCUGAcgacgagGAGGCCG-UGUacgaGGCGCacgCCCCg -3' miRNA: 3'- cGACUa------CUCCGGCuACG----UCGCG---GGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 31213 | 0.89 | 0.029982 |
Target: 5'- cGCUGGUgcugGAGGCCGcgGCGGCGCCgCCCg -3' miRNA: 3'- -CGACUA----CUCCGGCuaCGUCGCGG-GGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 94755 | 0.66 | 0.759763 |
Target: 5'- cGCgucuu-GGCCGggGCcGuCGCCCCCc -3' miRNA: 3'- -CGacuacuCCGGCuaCGuC-GCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 4006 | 0.66 | 0.759763 |
Target: 5'- --cGcgGGGcGCCGGgccCGGCGCCCgCCu -3' miRNA: 3'- cgaCuaCUC-CGGCUac-GUCGCGGG-GG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 116602 | 0.66 | 0.759763 |
Target: 5'- cGCUGccgcucUGcGGCgCGGacgGCGGCGCgCCCg -3' miRNA: 3'- -CGACu-----ACuCCG-GCUa--CGUCGCGgGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 23969 | 0.66 | 0.759763 |
Target: 5'- cGUUGGUGguugccauGGGCCGGcuUGGCGCCaguCCCa -3' miRNA: 3'- -CGACUAC--------UCCGGCUacGUCGCGG---GGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 81015 | 0.66 | 0.750295 |
Target: 5'- cGCggccacuUGcaGCCGGUGCuGCGCCuCCCg -3' miRNA: 3'- -CGacu----ACucCGGCUACGuCGCGG-GGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 117050 | 0.66 | 0.740726 |
Target: 5'- cGCcGAgGAGGCgGAaGCcuCGCCCUCg -3' miRNA: 3'- -CGaCUaCUCCGgCUaCGucGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 82110 | 0.66 | 0.750295 |
Target: 5'- gGCUcgGAgccGAGGcCCGAgcgcGCAGCGgCCgCCg -3' miRNA: 3'- -CGA--CUa--CUCC-GGCUa---CGUCGCgGG-GG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 75617 | 0.66 | 0.758821 |
Target: 5'- cCUGccAUGAGcgcagcgcaccaaGCCGGUGCggccucGGCGCaCCCCc -3' miRNA: 3'- cGAC--UACUC-------------CGGCUACG------UCGCG-GGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 101903 | 0.66 | 0.769121 |
Target: 5'- gGCaGcgGAGG-CGccGCGGCGCCCg- -3' miRNA: 3'- -CGaCuaCUCCgGCuaCGUCGCGGGgg -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 156 | 0.66 | 0.750295 |
Target: 5'- gGCcGG-GGGGCCGGgguucUGCgucuuggcccccGGgGCCCCCg -3' miRNA: 3'- -CGaCUaCUCCGGCU-----ACG------------UCgCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 58534 | 0.66 | 0.769121 |
Target: 5'- --cGAaGAGGCCGccGCGGUcuucGCCgCCg -3' miRNA: 3'- cgaCUaCUCCGGCuaCGUCG----CGGgGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 27346 | 0.66 | 0.758821 |
Target: 5'- uUUGccGcGGCCGccGCAGCcccagcuGCCCCCc -3' miRNA: 3'- cGACuaCuCCGGCuaCGUCG-------CGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 12558 | 0.66 | 0.749343 |
Target: 5'- cGCaGGUGcgcaacgGGcGCCGcguacGCGGCGCCCUCg -3' miRNA: 3'- -CGaCUAC-------UC-CGGCua---CGUCGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 73411 | 0.66 | 0.740726 |
Target: 5'- cGUUGcagGAucGGCUGAuUGCcgAGCGCCCUCu -3' miRNA: 3'- -CGACua-CU--CCGGCU-ACG--UCGCGGGGG- -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 90831 | 0.66 | 0.769121 |
Target: 5'- --aGgcGGGGCgagaucagCGA-GCGGCGCCCCg -3' miRNA: 3'- cgaCuaCUCCG--------GCUaCGUCGCGGGGg -5' |
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6684 | 3' | -59.2 | NC_001847.1 | + | 4320 | 0.66 | 0.759763 |
Target: 5'- gGCU-AUGAcGGCCGcuucggccGCGGcCGCCUCCg -3' miRNA: 3'- -CGAcUACU-CCGGCua------CGUC-GCGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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