miRNA display CGI


Results 21 - 40 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6727 5' -56.3 NC_001875.2 + 122968 0.66 0.878346
Target:  5'- gACGCCuuGCGuUugGAgccgcCGGCCgCGCCGg -3'
miRNA:   3'- -UGCGGu-CGUuAugUU-----GCUGGgGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 122911 0.73 0.50667
Target:  5'- uGCGCCuguGGCGAguCGGCGcuaaACCCCGCCa -3'
miRNA:   3'- -UGCGG---UCGUUauGUUGC----UGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 122269 0.7 0.679385
Target:  5'- cGCGCCcgaagcguGGCAcguGUugAGCGuCCaCCGCCGu -3'
miRNA:   3'- -UGCGG--------UCGU---UAugUUGCuGG-GGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 122142 0.79 0.238621
Target:  5'- uCGCUGGCGG-GCAACGugCCCGCCa -3'
miRNA:   3'- uGCGGUCGUUaUGUUGCugGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 119976 0.73 0.476811
Target:  5'- cGCGCacaccgcaaaaaaCAGCAAauagcaugauuUACAcCGACCCCGCCa -3'
miRNA:   3'- -UGCG-------------GUCGUU-----------AUGUuGCUGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 118536 0.69 0.729779
Target:  5'- gACGCCuccuuGCAcaggucgcacucGUACAGCgGGCCgCCGCUGu -3'
miRNA:   3'- -UGCGGu----CGU------------UAUGUUG-CUGG-GGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 118460 0.69 0.719834
Target:  5'- -gGCCGGCc--GCcuCGACCCUGUCGg -3'
miRNA:   3'- ugCGGUCGuuaUGuuGCUGGGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 118028 0.67 0.814311
Target:  5'- cCGCgAcCAGUGCGACGGCaaCGCCGc -3'
miRNA:   3'- uGCGgUcGUUAUGUUGCUGggGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 117531 0.7 0.679385
Target:  5'- -gGCCAGCAAgcucggcgccucccCGACGGCcagccggCCCGCCGg -3'
miRNA:   3'- ugCGGUCGUUau------------GUUGCUG-------GGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 117344 0.68 0.787324
Target:  5'- gGCGCgGGCGAacCGGCGGgCCgGCUGg -3'
miRNA:   3'- -UGCGgUCGUUauGUUGCUgGGgCGGC- -5'
6727 5' -56.3 NC_001875.2 + 115911 0.66 0.878346
Target:  5'- gGCGCCGGUuu--CGGCGcACgCCGCUa -3'
miRNA:   3'- -UGCGGUCGuuauGUUGC-UGgGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 115102 0.67 0.831479
Target:  5'- uACGCgCAGCGGcGCcGCGAUgUCGCUGa -3'
miRNA:   3'- -UGCG-GUCGUUaUGuUGCUGgGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 114930 0.68 0.796473
Target:  5'- uACGUCAGCAcaaucagcgACAucGCGGCgCCGCUGc -3'
miRNA:   3'- -UGCGGUCGUua-------UGU--UGCUGgGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 114382 0.69 0.699724
Target:  5'- cGCGuCCAGCG--ACGACGACUauuacguaCCGCCc -3'
miRNA:   3'- -UGC-GGUCGUuaUGUUGCUGG--------GGCGGc -5'
6727 5' -56.3 NC_001875.2 + 113737 0.68 0.777096
Target:  5'- aACGCCgugcuggcccaauGGCGcgccGUGC-GCGACCgCGCCGu -3'
miRNA:   3'- -UGCGG-------------UCGU----UAUGuUGCUGGgGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 113623 0.71 0.586892
Target:  5'- cGCGgCGGCAAgagcgGCGACGGCgCCGCg- -3'
miRNA:   3'- -UGCgGUCGUUa----UGUUGCUGgGGCGgc -5'
6727 5' -56.3 NC_001875.2 + 113527 0.67 0.839791
Target:  5'- cGCGCCgcugaccgGGCAAUgagcgACGACGACCUggaggcaaucguCGCCu -3'
miRNA:   3'- -UGCGG--------UCGUUA-----UGUUGCUGGG------------GCGGc -5'
6727 5' -56.3 NC_001875.2 + 112369 0.67 0.831479
Target:  5'- cCGCCAGCAc--CAGCG-CCCgaGCCu -3'
miRNA:   3'- uGCGGUCGUuauGUUGCuGGGg-CGGc -5'
6727 5' -56.3 NC_001875.2 + 112045 0.69 0.729779
Target:  5'- -gGCCGGC---GCGACGGUCCgGCCGg -3'
miRNA:   3'- ugCGGUCGuuaUGUUGCUGGGgCGGC- -5'
6727 5' -56.3 NC_001875.2 + 111870 0.7 0.648602
Target:  5'- cACGUCAGCAAcgGCGA-GGCgCCgGCCGg -3'
miRNA:   3'- -UGCGGUCGUUa-UGUUgCUG-GGgCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.