miRNA display CGI


Results 1 - 20 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6727 5' -56.3 NC_001875.2 + 417 1.08 0.002832
Target:  5'- gACGCCAGCAAUACAACGACCCCGCCGc -3'
miRNA:   3'- -UGCGGUCGUUAUGUUGCUGGGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 110341 0.73 0.477761
Target:  5'- aACGCCAGCGcggACGagcgcaguGCGACgCCGCCc -3'
miRNA:   3'- -UGCGGUCGUua-UGU--------UGCUGgGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 85464 0.73 0.496947
Target:  5'- aGCGCCcgcGGCAAUGCccGCG-CCCgCGCCGc -3'
miRNA:   3'- -UGCGG---UCGUUAUGu-UGCuGGG-GCGGC- -5'
6727 5' -56.3 NC_001875.2 + 44626 0.66 0.885412
Target:  5'- cGCGCCGguGCAcgACuugGCGcACUgCGCCGa -3'
miRNA:   3'- -UGCGGU--CGUuaUGu--UGC-UGGgGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 122142 0.79 0.238621
Target:  5'- uCGCUGGCGG-GCAACGugCCCGCCa -3'
miRNA:   3'- uGCGGUCGUUaUGUUGCugGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 54250 0.78 0.250488
Target:  5'- uGCGCUGGCAGcGCAuCGACCCCGUgGg -3'
miRNA:   3'- -UGCGGUCGUUaUGUuGCUGGGGCGgC- -5'
6727 5' -56.3 NC_001875.2 + 38041 0.77 0.309956
Target:  5'- cGCGCCAGCAAgccGCuggcGCGGCCC-GCCGu -3'
miRNA:   3'- -UGCGGUCGUUa--UGu---UGCUGGGgCGGC- -5'
6727 5' -56.3 NC_001875.2 + 130248 0.76 0.347389
Target:  5'- gUGCUAGCGGUgccucaGCGGCGACCCUGCUu -3'
miRNA:   3'- uGCGGUCGUUA------UGUUGCUGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 89696 0.74 0.413725
Target:  5'- uGCGCguGCGuauaGACGAUCCCGCCu -3'
miRNA:   3'- -UGCGguCGUuaugUUGCUGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 31854 0.74 0.458947
Target:  5'- uGCGCCGGCGGcgcgcaaGCGGCGGUCCaCGCCGg -3'
miRNA:   3'- -UGCGGUCGUUa------UGUUGCUGGG-GCGGC- -5'
6727 5' -56.3 NC_001875.2 + 19256 0.74 0.440535
Target:  5'- cGCGCaCAGCA--AC-ACGGCCCUGUCGg -3'
miRNA:   3'- -UGCG-GUCGUuaUGuUGCUGGGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 29440 0.75 0.396419
Target:  5'- cACGCCA-CAcgACcGCG-CCCCGCCGg -3'
miRNA:   3'- -UGCGGUcGUuaUGuUGCuGGGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 39201 0.87 0.0686
Target:  5'- uGCGCUuGCGGUACAGCG-CCCCGCCGa -3'
miRNA:   3'- -UGCGGuCGUUAUGUUGCuGGGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 101256 0.74 0.449689
Target:  5'- uGCGUCAGCG-----GCGACCCCGCUu -3'
miRNA:   3'- -UGCGGUCGUuauguUGCUGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 68723 0.84 0.108108
Target:  5'- gGCGCCAcGCGGUGC-GCGACCgCCGCCGc -3'
miRNA:   3'- -UGCGGU-CGUUAUGuUGCUGG-GGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 98818 0.76 0.363241
Target:  5'- cACGUCuccgaauuguGCAcaAUGCAGCGGCCCuCGCCGg -3'
miRNA:   3'- -UGCGGu---------CGU--UAUGUUGCUGGG-GCGGC- -5'
6727 5' -56.3 NC_001875.2 + 9902 0.74 0.449689
Target:  5'- gACGCCAucGC-GUACAACGACagUCGCCGg -3'
miRNA:   3'- -UGCGGU--CGuUAUGUUGCUGg-GGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 40251 0.73 0.487309
Target:  5'- aGCGCCAGcCAGUggcgcgucagcGCcGCGGCCUCGUCGu -3'
miRNA:   3'- -UGCGGUC-GUUA-----------UGuUGCUGGGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 24529 0.8 0.200753
Target:  5'- uGCGUCAGCA--ACGGCGACCCCGUUu -3'
miRNA:   3'- -UGCGGUCGUuaUGUUGCUGGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 97188 0.77 0.289012
Target:  5'- uGCGCCGGCAAgcguuUACGACGcUgCCGCCGu -3'
miRNA:   3'- -UGCGGUCGUU-----AUGUUGCuGgGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.