miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6728 5' -53.5 NC_001875.2 + 712 1.09 0.003776
Target:  5'- gACUUGCACAACGCCACCGGCUACAUCc -3'
miRNA:   3'- -UGAACGUGUUGCGGUGGCCGAUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 112573 0.68 0.850741
Target:  5'- uGCUUGCgacuGCGGCGaagGCCGGgaACGUCg -3'
miRNA:   3'- -UGAACG----UGUUGCgg-UGGCCgaUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 64897 0.68 0.86673
Target:  5'- ---cGCGCAACcCCACCGuGUUGCAg- -3'
miRNA:   3'- ugaaCGUGUUGcGGUGGC-CGAUGUag -5'
6728 5' -53.5 NC_001875.2 + 90527 0.66 0.948242
Target:  5'- gGCgcGCGCGGCGUgucuuguguggucugCGCCGGCcggucggccaauuUGCAUCg -3'
miRNA:   3'- -UGaaCGUGUUGCG---------------GUGGCCG-------------AUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 114348 0.72 0.687497
Target:  5'- aACUUGCGCAAuCGCgCGCUGGCggugaagcugGCGUUu -3'
miRNA:   3'- -UGAACGUGUU-GCG-GUGGCCGa---------UGUAG- -5'
6728 5' -53.5 NC_001875.2 + 30603 0.72 0.687497
Target:  5'- ---cGCGCAACGCgCGCCaGCUGCGc- -3'
miRNA:   3'- ugaaCGUGUUGCG-GUGGcCGAUGUag -5'
6728 5' -53.5 NC_001875.2 + 81478 0.71 0.725981
Target:  5'- cGCgcgGCACGaugacgaggaggagGCGCCGCCGGCggcgcGCGUg -3'
miRNA:   3'- -UGaa-CGUGU--------------UGCGGUGGCCGa----UGUAg -5'
6728 5' -53.5 NC_001875.2 + 91605 0.71 0.739245
Target:  5'- gACaUGCGCGcccacGCGCCGCCGcucaGCUACAg- -3'
miRNA:   3'- -UGaACGUGU-----UGCGGUGGC----CGAUGUag -5'
6728 5' -53.5 NC_001875.2 + 12113 0.7 0.788468
Target:  5'- uGCUucUGCAacGCGCCGCCGGUcGCGc- -3'
miRNA:   3'- -UGA--ACGUguUGCGGUGGCCGaUGUag -5'
6728 5' -53.5 NC_001875.2 + 99462 0.68 0.849919
Target:  5'- uGC-UGCGCAgcccguauacaACGCCGCCgaggagcGGCUGCAg- -3'
miRNA:   3'- -UGaACGUGU-----------UGCGGUGG-------CCGAUGUag -5'
6728 5' -53.5 NC_001875.2 + 72518 0.7 0.788468
Target:  5'- -aUUGCGCAGCGCgGCCGagacaaGC-GCGUCg -3'
miRNA:   3'- ugAACGUGUUGCGgUGGC------CGaUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 67818 0.7 0.769164
Target:  5'- cUUUGCGC-ACGuguccaccuCCACCGGCUACGa- -3'
miRNA:   3'- uGAACGUGuUGC---------GGUGGCCGAUGUag -5'
6728 5' -53.5 NC_001875.2 + 95504 0.8 0.258152
Target:  5'- gACgcgUGCACGuGCGCCGCCGGUUACGa- -3'
miRNA:   3'- -UGa--ACGUGU-UGCGGUGGCCGAUGUag -5'
6728 5' -53.5 NC_001875.2 + 99553 0.69 0.807163
Target:  5'- cGC-UGCGCGacccgcugGCGCCGCCGGUgcgGCGc- -3'
miRNA:   3'- -UGaACGUGU--------UGCGGUGGCCGa--UGUag -5'
6728 5' -53.5 NC_001875.2 + 126987 0.74 0.564624
Target:  5'- cACUUGUGCAcuuuGCGCCGCCucggucuccauuauuGGCUGCAa- -3'
miRNA:   3'- -UGAACGUGU----UGCGGUGG---------------CCGAUGUag -5'
6728 5' -53.5 NC_001875.2 + 107720 0.71 0.749332
Target:  5'- aGCUUGUGCGACGgCGCCGcGCU-UGUCc -3'
miRNA:   3'- -UGAACGUGUUGCgGUGGC-CGAuGUAG- -5'
6728 5' -53.5 NC_001875.2 + 11033 0.69 0.807163
Target:  5'- -gUUGCGCGgcaGCGCCACCgacgcGGCcaccGCGUCg -3'
miRNA:   3'- ugAACGUGU---UGCGGUGG-----CCGa---UGUAG- -5'
6728 5' -53.5 NC_001875.2 + 57484 0.68 0.850741
Target:  5'- ---cGCGCAGCGCUGCCGcaacaaUUGCGUCg -3'
miRNA:   3'- ugaaCGUGUUGCGGUGGCc-----GAUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 39470 0.72 0.66638
Target:  5'- ---cGCGCGcACGCCGCCGGC-ACGg- -3'
miRNA:   3'- ugaaCGUGU-UGCGGUGGCCGaUGUag -5'
6728 5' -53.5 NC_001875.2 + 62187 0.71 0.697987
Target:  5'- aGCUUGCGCAGCaGCgCGauGGCgACAUCg -3'
miRNA:   3'- -UGAACGUGUUG-CG-GUggCCGaUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.