Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6729 | 3' | -62.8 | NC_001875.2 | + | 19823 | 0.69 | 0.386804 |
Target: 5'- uCAACGCUGUG-GUCcUGGGCa-CGCCa -3' miRNA: 3'- -GUUGCGACACgCGGaGCCCGggGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 74182 | 0.69 | 0.394901 |
Target: 5'- uUAGCGCggcaaucuUGUGCGCCgCGGuGCUcucguaccgguCCGCCg -3' miRNA: 3'- -GUUGCG--------ACACGCGGaGCC-CGG-----------GGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 12178 | 0.69 | 0.378818 |
Target: 5'- --cCGCUGUGCGCCgccgccgaGGuuuGCCUgGCCg -3' miRNA: 3'- guuGCGACACGCGGag------CC---CGGGgCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 39218 | 0.68 | 0.428358 |
Target: 5'- gCGGCGCacaaUGgccaUGCGCUUgCGGuacagcGCCCCGCCg -3' miRNA: 3'- -GUUGCG----AC----ACGCGGA-GCC------CGGGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 67594 | 0.68 | 0.428358 |
Target: 5'- aGACGCUGU-UGCU--GGGCUCCGUCa -3' miRNA: 3'- gUUGCGACAcGCGGagCCCGGGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 18297 | 0.68 | 0.428358 |
Target: 5'- --cCGCUucGCGCgCUUauuGGCCCCGCCg -3' miRNA: 3'- guuGCGAcaCGCG-GAGc--CCGGGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 17085 | 0.68 | 0.454521 |
Target: 5'- gCAACGCgccgaUGCGCUcaaacaCGaGGCCCgCGCCg -3' miRNA: 3'- -GUUGCGac---ACGCGGa-----GC-CCGGG-GCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 84855 | 0.68 | 0.428358 |
Target: 5'- cCAACGUgGUGCGCUcaUCGcGGCUcaCCGUCu -3' miRNA: 3'- -GUUGCGaCACGCGG--AGC-CCGG--GGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 72593 | 0.68 | 0.444826 |
Target: 5'- gGGCGCUGcGgGCgCUUGGGCCUCcagguuguuuacgGCCu -3' miRNA: 3'- gUUGCGACaCgCG-GAGCCCGGGG-------------CGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 99342 | 0.68 | 0.445703 |
Target: 5'- aAGCGUcgUGUccGCGCaaCUUGGGCgcgCCCGCCa -3' miRNA: 3'- gUUGCG--ACA--CGCG--GAGCCCG---GGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 10393 | 0.68 | 0.428358 |
Target: 5'- gAACGCcGccGCGCCguggCGcGGCaCCCGCUg -3' miRNA: 3'- gUUGCGaCa-CGCGGa---GC-CCG-GGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 38131 | 0.68 | 0.472435 |
Target: 5'- uCGGCGCUGaGCGCg-CaGGCCgCCGCg -3' miRNA: 3'- -GUUGCGACaCGCGgaGcCCGG-GGCGg -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 112517 | 0.68 | 0.472435 |
Target: 5'- gGGCGCUGgugcugGCGgCUCGGGCagcuCCuCCu -3' miRNA: 3'- gUUGCGACa-----CGCgGAGCCCGg---GGcGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 85222 | 0.67 | 0.51963 |
Target: 5'- -cGCGCgGUaGCGCCgcaugucgacgagcgCGGGUUCCGCg -3' miRNA: 3'- guUGCGaCA-CGCGGa--------------GCCCGGGGCGg -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 5924 | 0.67 | 0.528157 |
Target: 5'- uGGCGUUGgguaGCGCCgcgcaggUGGGCgCgGCCu -3' miRNA: 3'- gUUGCGACa---CGCGGa------GCCCGgGgCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 41451 | 0.67 | 0.528157 |
Target: 5'- aCAACGCguuuaGCGCCaUCGacgaGCCCgGCCu -3' miRNA: 3'- -GUUGCGaca--CGCGG-AGCc---CGGGgCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 49532 | 0.67 | 0.528157 |
Target: 5'- cCAGuCGCUG-GUGCUggacuUgGGGCCCgaCGCCa -3' miRNA: 3'- -GUU-GCGACaCGCGG-----AgCCCGGG--GCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 62351 | 0.67 | 0.528157 |
Target: 5'- gGGCGCg--GCGCCaguUUGGGUCgCgCGCCa -3' miRNA: 3'- gUUGCGacaCGCGG---AGCCCGG-G-GCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 55328 | 0.67 | 0.537691 |
Target: 5'- gCGACGgUGaugacGCGCCgcuucggGGGCgCCGCCu -3' miRNA: 3'- -GUUGCgACa----CGCGGag-----CCCGgGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 70922 | 0.67 | 0.481524 |
Target: 5'- ---aGCgGUGCGUCagCGccGGCCCCGCUu -3' miRNA: 3'- guugCGaCACGCGGa-GC--CCGGGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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