miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6730 3' -54 NC_001875.2 + 118727 0.66 0.960851
Target:  5'- cGGUUaccugcgaaGCAUCCaGCUG-CGGcacauGGUGGCGg -3'
miRNA:   3'- -CCAG---------UGUAGG-CGGCuGCCu----UUACCGC- -5'
6730 3' -54 NC_001875.2 + 118227 0.66 0.960851
Target:  5'- uGGUgGCAgcagucUCCGuuGuCGGAcaaucgugcgGGUGGCGc -3'
miRNA:   3'- -CCAgUGU------AGGCggCuGCCU----------UUACCGC- -5'
6730 3' -54 NC_001875.2 + 113531 0.66 0.960851
Target:  5'- -aUCGCGcgCCGCUGAcCGGGcAAUGaGCGa -3'
miRNA:   3'- ccAGUGUa-GGCGGCU-GCCU-UUAC-CGC- -5'
6730 3' -54 NC_001875.2 + 30197 0.66 0.957175
Target:  5'- uGG-CGcCGUUCGCCgcGACGGccguuGUGGCGa -3'
miRNA:   3'- -CCaGU-GUAGGCGG--CUGCCuu---UACCGC- -5'
6730 3' -54 NC_001875.2 + 126097 0.66 0.957175
Target:  5'- uGUCGCuggCCGCCGA-----AUGGCGg -3'
miRNA:   3'- cCAGUGua-GGCGGCUgccuuUACCGC- -5'
6730 3' -54 NC_001875.2 + 95355 0.66 0.95327
Target:  5'- cGGcgCACGUgcaCgCGUCGGCGGAAAacGGCGu -3'
miRNA:   3'- -CCa-GUGUA---G-GCGGCUGCCUUUa-CCGC- -5'
6730 3' -54 NC_001875.2 + 11137 0.66 0.95327
Target:  5'- -uUCGCGaagugaUUGCCGACGGGGA-GGCGu -3'
miRNA:   3'- ccAGUGUa-----GGCGGCUGCCUUUaCCGC- -5'
6730 3' -54 NC_001875.2 + 93243 0.66 0.949131
Target:  5'- uGUCGCGUCCGCCGcucaucagcaACGuGuuuuuguuuGcgGGCGg -3'
miRNA:   3'- cCAGUGUAGGCGGC----------UGC-Cu--------UuaCCGC- -5'
6730 3' -54 NC_001875.2 + 4494 0.66 0.949131
Target:  5'- aGG-CACAcguugcgucugcUCCGCUG-CGGAAAgcGGCGc -3'
miRNA:   3'- -CCaGUGU------------AGGCGGCuGCCUUUa-CCGC- -5'
6730 3' -54 NC_001875.2 + 110051 0.66 0.944757
Target:  5'- cGUUaaACGUUCGCgGcGCGGGGAUgGGCGg -3'
miRNA:   3'- cCAG--UGUAGGCGgC-UGCCUUUA-CCGC- -5'
6730 3' -54 NC_001875.2 + 104304 0.66 0.944757
Target:  5'- cGGaCGCGUCuauCGCC-ACGGGAAUGGg- -3'
miRNA:   3'- -CCaGUGUAG---GCGGcUGCCUUUACCgc -5'
6730 3' -54 NC_001875.2 + 77654 0.66 0.944757
Target:  5'- cGGUCACGUCguuggacgCGcCCGGCGcGuug-GGCGa -3'
miRNA:   3'- -CCAGUGUAG--------GC-GGCUGC-CuuuaCCGC- -5'
6730 3' -54 NC_001875.2 + 14507 0.67 0.940143
Target:  5'- --gCGCuuauUCCGCUGuCGGggGaacuUGGCGg -3'
miRNA:   3'- ccaGUGu---AGGCGGCuGCCuuU----ACCGC- -5'
6730 3' -54 NC_001875.2 + 111762 0.67 0.930189
Target:  5'- -aUCACGUgCGCCGACGac--UGGUGu -3'
miRNA:   3'- ccAGUGUAgGCGGCUGCcuuuACCGC- -5'
6730 3' -54 NC_001875.2 + 41953 0.68 0.907363
Target:  5'- cGG-CGCGcgUGCCGGCGGAAAUcacaagcaugGGCGu -3'
miRNA:   3'- -CCaGUGUagGCGGCUGCCUUUA----------CCGC- -5'
6730 3' -54 NC_001875.2 + 74317 0.68 0.907363
Target:  5'- --aCGCGUCCaaGCUGGCGGcGGcgGGCGc -3'
miRNA:   3'- ccaGUGUAGG--CGGCUGCC-UUuaCCGC- -5'
6730 3' -54 NC_001875.2 + 29099 0.68 0.906743
Target:  5'- --gCACAUugagcggCCgGCCGuugaaGCGGAGGUGGCGg -3'
miRNA:   3'- ccaGUGUA-------GG-CGGC-----UGCCUUUACCGC- -5'
6730 3' -54 NC_001875.2 + 43980 0.68 0.900409
Target:  5'- uGGUCGCcgaCCGCC-ACGGAcagcccgAcgGGCGc -3'
miRNA:   3'- -CCAGUGua-GGCGGcUGCCU-------UuaCCGC- -5'
6730 3' -54 NC_001875.2 + 111798 0.68 0.894506
Target:  5'- cGGUgCACG-CgGCCGACGGcgccUGGCu -3'
miRNA:   3'- -CCA-GUGUaGgCGGCUGCCuuu-ACCGc -5'
6730 3' -54 NC_001875.2 + 65432 0.68 0.894506
Target:  5'- cGUCcgGCGUgcaCCGCUGGCGGucGGUGGCc -3'
miRNA:   3'- cCAG--UGUA---GGCGGCUGCCu-UUACCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.