Results 1 - 20 of 81 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6730 | 5' | -56.1 | NC_001875.2 | + | 1924 | 1.13 | 0.001373 |
Target: 5'- cGGCGGCAUGCUCGUGGUCACAUCCGCc -3' miRNA: 3'- -CCGCCGUACGAGCACCAGUGUAGGCG- -5' |
|||||||
6730 | 5' | -56.1 | NC_001875.2 | + | 1972 | 1.13 | 0.001373 |
Target: 5'- cGGCGGCAUGCUCGUGGUCACAUCCGCc -3' miRNA: 3'- -CCGCCGUACGAGCACCAGUGUAGGCG- -5' |
|||||||
6730 | 5' | -56.1 | NC_001875.2 | + | 2011 | 0.85 | 0.109095 |
Target: 5'- cGGCGGCAUGCUCGUGGcCAaaucuacCAUUgGCg -3' miRNA: 3'- -CCGCCGUACGAGCACCaGU-------GUAGgCG- -5' |
|||||||
6730 | 5' | -56.1 | NC_001875.2 | + | 2062 | 0.85 | 0.109095 |
Target: 5'- cGGCGGCAUGCUCGUGGcCAaaucuacCAUUgGCg -3' miRNA: 3'- -CCGCCGUACGAGCACCaGU-------GUAGgCG- -5' |
|||||||
6730 | 5' | -56.1 | NC_001875.2 | + | 28811 | 0.79 | 0.240443 |
Target: 5'- cGCGGCAaacgggGCaCGUGGUCACGcCCGCa -3' miRNA: 3'- cCGCCGUa-----CGaGCACCAGUGUaGGCG- -5' |
|||||||
6730 | 5' | -56.1 | NC_001875.2 | + | 54366 | 0.78 | 0.277559 |
Target: 5'- cGGCGGCAacgGCUCG-GGUCugGUgCCGa -3' miRNA: 3'- -CCGCCGUa--CGAGCaCCAGugUA-GGCg -5' |
|||||||
6730 | 5' | -56.1 | NC_001875.2 | + | 43315 | 0.75 | 0.433311 |
Target: 5'- cGGCGcGCGcGCgggucggCGUGGUUGCcgCCGCg -3' miRNA: 3'- -CCGC-CGUaCGa------GCACCAGUGuaGGCG- -5' |
|||||||
6730 | 5' | -56.1 | NC_001875.2 | + | 37234 | 0.75 | 0.424389 |
Target: 5'- cGGCGGUGUcguccGCcaaacacagCGUGGcCGCGUCCGCg -3' miRNA: 3'- -CCGCCGUA-----CGa--------GCACCaGUGUAGGCG- -5' |
|||||||
6730 | 5' | -56.1 | NC_001875.2 | + | 70366 | 0.74 | 0.460716 |
Target: 5'- cGGCGGCGccucggGCgcccaGUGGUCGCcgUCGCc -3' miRNA: 3'- -CCGCCGUa-----CGag---CACCAGUGuaGGCG- -5' |
|||||||
6730 | 5' | -56.1 | NC_001875.2 | + | 77672 | 0.74 | 0.460716 |
Target: 5'- uGGCGGuCGUGCgCGUgacGGUCACGUCguuggaCGCg -3' miRNA: 3'- -CCGCC-GUACGaGCA---CCAGUGUAG------GCG- -5' |
|||||||
6730 | 5' | -56.1 | NC_001875.2 | + | 40810 | 0.73 | 0.527941 |
Target: 5'- cGGCGcuuGCGUGUUguUGGUCGgGUCCGCc -3' miRNA: 3'- -CCGC---CGUACGAgcACCAGUgUAGGCG- -5' |
|||||||
6730 | 5' | -56.1 | NC_001875.2 | + | 42762 | 0.73 | 0.498623 |
Target: 5'- aGCGGCGcGCUCG-GGUCGgcCGUgCGCa -3' miRNA: 3'- cCGCCGUaCGAGCaCCAGU--GUAgGCG- -5' |
|||||||
6730 | 5' | -56.1 | NC_001875.2 | + | 38324 | 0.72 | 0.547838 |
Target: 5'- cGGCGGCAUGCaagacgugcUGUGGUUGCugugUCGCu -3' miRNA: 3'- -CCGCCGUACGa--------GCACCAGUGua--GGCG- -5' |
|||||||
6730 | 5' | -56.1 | NC_001875.2 | + | 87882 | 0.72 | 0.567965 |
Target: 5'- uGGCGGCGaguUGUcCGcGGuUUGCGUCCGCg -3' miRNA: 3'- -CCGCCGU---ACGaGCaCC-AGUGUAGGCG- -5' |
|||||||
6730 | 5' | -56.1 | NC_001875.2 | + | 37614 | 0.72 | 0.555864 |
Target: 5'- cGGCGGCGUGCUCGccgacgacaUGGggcucggcaagaCGCuGUCCGUc -3' miRNA: 3'- -CCGCCGUACGAGC---------ACCa-----------GUG-UAGGCG- -5' |
|||||||
6730 | 5' | -56.1 | NC_001875.2 | + | 25918 | 0.72 | 0.547838 |
Target: 5'- aGCGGCcaAUGCccgaguuuuUCGUGGUgGCG-CCGCg -3' miRNA: 3'- cCGCCG--UACG---------AGCACCAgUGUaGGCG- -5' |
|||||||
6730 | 5' | -56.1 | NC_001875.2 | + | 98595 | 0.72 | 0.578099 |
Target: 5'- cGCGGUAgcGCUCGUGGcugagcuggCGCucGUCCGCu -3' miRNA: 3'- cCGCCGUa-CGAGCACCa--------GUG--UAGGCG- -5' |
|||||||
6730 | 5' | -56.1 | NC_001875.2 | + | 47825 | 0.72 | 0.588273 |
Target: 5'- cGCGGCGcGC-CGcGGcCGCGUCCGUg -3' miRNA: 3'- cCGCCGUaCGaGCaCCaGUGUAGGCG- -5' |
|||||||
6730 | 5' | -56.1 | NC_001875.2 | + | 113364 | 0.72 | 0.577084 |
Target: 5'- cGGCGcucaaacGCAUGCUgGUGGgCACGUCgcagCGCg -3' miRNA: 3'- -CCGC-------CGUACGAgCACCaGUGUAG----GCG- -5' |
|||||||
6730 | 5' | -56.1 | NC_001875.2 | + | 8461 | 0.71 | 0.608709 |
Target: 5'- uGCGG-GUGCU--UGGUCACGUCgCGCg -3' miRNA: 3'- cCGCCgUACGAgcACCAGUGUAG-GCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home