miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6730 5' -56.1 NC_001875.2 + 240 0.67 0.863646
Target:  5'- cGGCGGCGgaucggGCggcgCGUcauuGGUguCGUUCGCc -3'
miRNA:   3'- -CCGCCGUa-----CGa---GCA----CCAguGUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 280 0.67 0.82327
Target:  5'- uGGCGucgccGCAUGCUgGccaGGUCcagcaccuCGUCCGCg -3'
miRNA:   3'- -CCGC-----CGUACGAgCa--CCAGu-------GUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 1885 0.7 0.680374
Target:  5'- cGGCGGCGgcgGCgCGaccgGuGUCGCGcCCGCa -3'
miRNA:   3'- -CCGCCGUa--CGaGCa---C-CAGUGUaGGCG- -5'
6730 5' -56.1 NC_001875.2 + 1924 1.13 0.001373
Target:  5'- cGGCGGCAUGCUCGUGGUCACAUCCGCc -3'
miRNA:   3'- -CCGCCGUACGAGCACCAGUGUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 1972 1.13 0.001373
Target:  5'- cGGCGGCAUGCUCGUGGUCACAUCCGCc -3'
miRNA:   3'- -CCGCCGUACGAGCACCAGUGUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 2011 0.85 0.109095
Target:  5'- cGGCGGCAUGCUCGUGGcCAaaucuacCAUUgGCg -3'
miRNA:   3'- -CCGCCGUACGAGCACCaGU-------GUAGgCG- -5'
6730 5' -56.1 NC_001875.2 + 2062 0.85 0.109095
Target:  5'- cGGCGGCAUGCUCGUGGcCAaaucuacCAUUgGCg -3'
miRNA:   3'- -CCGCCGUACGAGCACCaGU-------GUAGgCG- -5'
6730 5' -56.1 NC_001875.2 + 4307 0.67 0.82327
Target:  5'- cGCGGUcuugcauuuuGUGCaCGUGaUCACGUUCGCc -3'
miRNA:   3'- cCGCCG----------UACGaGCACcAGUGUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 4427 0.69 0.717648
Target:  5'- cGGCGGCAUGCUgacgCGcgccgccagcacuuUGGcCAggcucugagcgcCGUCCGCg -3'
miRNA:   3'- -CCGCCGUACGA----GC--------------ACCaGU------------GUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 5102 0.69 0.740341
Target:  5'- gGGCuGCGcGCgcuaaucgaCGgaaaGGUCACGUCCGCg -3'
miRNA:   3'- -CCGcCGUaCGa--------GCa---CCAGUGUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 6657 0.66 0.88541
Target:  5'- cGGCGGCcagcGUGUuggCGcGG-CAC-UCCGCg -3'
miRNA:   3'- -CCGCCG----UACGa--GCaCCaGUGuAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 8461 0.71 0.608709
Target:  5'- uGCGG-GUGCU--UGGUCACGUCgCGCg -3'
miRNA:   3'- cCGCCgUACGAgcACCAGUGUAG-GCG- -5'
6730 5' -56.1 NC_001875.2 + 13308 0.67 0.848079
Target:  5'- cGGCGacgccuaccGCGUGgUCGU-GUCGCcgCUGCa -3'
miRNA:   3'- -CCGC---------CGUACgAGCAcCAGUGuaGGCG- -5'
6730 5' -56.1 NC_001875.2 + 15496 0.69 0.720633
Target:  5'- cGCGGCGuuguucgggcuuUGCUCGU--UCGCGUUCGUg -3'
miRNA:   3'- cCGCCGU------------ACGAGCAccAGUGUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 15970 0.67 0.839997
Target:  5'- cGCGGCAcgcUGUUgGUGGU-GCAguacCCGCc -3'
miRNA:   3'- cCGCCGU---ACGAgCACCAgUGUa---GGCG- -5'
6730 5' -56.1 NC_001875.2 + 20848 0.71 0.608709
Target:  5'- uGGCGGCG-GCUUG-GuGUCACGgcgCUGCu -3'
miRNA:   3'- -CCGCCGUaCGAGCaC-CAGUGUa--GGCG- -5'
6730 5' -56.1 NC_001875.2 + 25918 0.72 0.547838
Target:  5'- aGCGGCcaAUGCccgaguuuuUCGUGGUgGCG-CCGCg -3'
miRNA:   3'- cCGCCG--UACG---------AGCACCAgUGUaGGCG- -5'
6730 5' -56.1 NC_001875.2 + 28811 0.79 0.240443
Target:  5'- cGCGGCAaacgggGCaCGUGGUCACGcCCGCa -3'
miRNA:   3'- cCGCCGUa-----CGaGCACCAGUGUaGGCG- -5'
6730 5' -56.1 NC_001875.2 + 29340 0.68 0.796892
Target:  5'- uGCGGCGcccaccGCUUGUGGUC-CGuuUCCGg -3'
miRNA:   3'- cCGCCGUa-----CGAGCACCAGuGU--AGGCg -5'
6730 5' -56.1 NC_001875.2 + 30222 0.68 0.78687
Target:  5'- uGUGGCGaccacuuUGUaCGUGGUCGCGUUgaCGCu -3'
miRNA:   3'- cCGCCGU-------ACGaGCACCAGUGUAG--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.